Basic Information

Gene Symbol
-
Assembly
GCA_950371115.1
Location
OX493339.1:15005841-15025915[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.013 1.3 10.7 1.3 1 23 313 335 313 335 0.98
2 10 0.0011 0.11 14.0 3.5 2 23 343 364 342 364 0.95
3 10 0.0054 0.52 11.9 2.2 1 23 395 418 395 418 0.97
4 10 0.0017 0.16 13.5 0.2 1 23 422 445 422 445 0.96
5 10 0.37 35 6.1 2.7 3 23 707 728 707 728 0.98
6 10 0.023 2.2 9.9 0.1 2 23 748 770 747 770 0.96
7 10 5.5e-06 0.00053 21.3 0.8 1 23 781 803 781 803 0.99
8 10 4.7e-05 0.0045 18.4 1.8 1 23 809 831 809 831 0.99
9 10 0.00023 0.022 16.2 0.4 1 23 837 859 837 859 0.98
10 10 0.0016 0.16 13.5 0.2 1 23 865 888 865 888 0.97

Sequence Information

Coding Sequence
ATGGAGCAAGTTAAAGTGTGCAGGATTTGCCTTATTATGGACGTAAAAATGTATGACTTGCGGTCACATCCATTGGATCTTTATTCACAATCAATAGAAACATTGACTTCCATGGATCTTCCGCCGTATGCATGTTTTGTGTGCGCTGCCTTGATCAAGAACACATACTTCTTTAAAGAAAAGTGTATACAGGGTCAGAATGCTTTGTACAATCAGATTAATTCCATTGGGATGATAATAGAACAAAACATTAGAAACATAAATAGATATCAATTAAATCTAGTTTCAAGTCTGAAATGTGACAATATTTGTACAGACAGTACCATCAATATTACATATGAAGAGCCACAGATTGCCATAAAAGATGAATGCAATGAAGACATGGGCGATGACGGACAAAAATATGAATTGGAATTAGAATTCTTCAAACATGAAATGGACGCAGATGAAATTAGATTCTCCAGTGATGATGAACCATTGgtcttacataaaataaataaacaaaaattaaaagacaaaacacataaaaataaaggCAAGAAGAAGAAAGTAGATAAAACAAAGTTGAAAATAGAGGATAGCAGTCAATTGGAGGAATCTTTTAGTTCGGAAGCAGCCCCCGCAGTAGCGACGCGCAAGCGCGGCCGCCCGCCTAAAGGCTCGCCCGCGTCTACTGCCGCGCCTCGCTCGCGCCGCACCGCCAACACCGGCGGCGTGCTCGACGACGACAGCAATATGGAGGAGTACGTCACCATCGTCACGCTCACGGGATCCCCCTCGCCCTCGCCTCGCTCGCGCCGCACCGCCAACACCGGCGGCGTGCTCGATGACGACAGCAATATGGAGGAGTACGTCACCATCGTCACGCTCTCGAAAGAAGAACAGCTAGAAGAGATAGAGAAGCGCAAGACTTCGTCCAATTATCTGAACGCGTTGTACAAGTGCGACTTCTGCTACAAGGGCTTCATTGACGACGCGGCCTGGAAGCACCACCTCTCGCGACATGAGCTGAGGCCAGGCGACGTAGAGTGCGAGATCTGCAAGTTCCGCTTCAAGAACAAGCGCCACTTGTCAAAGCACGTGTCCAACCACGAGAAGAAGTACGCCTGCAAGGCGTGCCCCTACGTCTCTAAGTGCACAACTCAAGCTAAACAGCATCAGAGATGGCACAAAGGCGTAACTTATAAATGTCAGCACTGCGATGAAATTTTGTCCAAATGGACGTCGTACCTCAGCCACCTGCGGCTGAAGCACCCGTCGGAGTTCATCTGCGGCGTGTGCGGGTACTCGTTCGTGAGCCGCCTCGGCCTCACCATGCATCGCAGCATGATGCACAAGGACGTGCGGCATGATGCACAAGGACGTGCGGGTGAGTGCAACTCTTTAGGGTACTCGTTCGTGAGCCGCCTCGGCCTCACCATGCATCGCAGCATGATGCACAAGGACGTGCGGCATGATGCACAAGGACGTGCGGGTGAGTGCAACTCTTTAGGGTACTCGTTCGTGAGCCGCCTCGGCCTCACCATGCATCGCAGCATGATGCACAAGGACGTGCGGCATGATGCACAAGGACGTGCGGGTGAGTGCAACTCTTTAGGGTACTCGTTCGTGAGCCGCCTCGGCCTCACCATGCATCGCAGCATGATGCACAAGGACGTGCGGCATGATGCACAAGGACGTGCGGGTGAGTGCAACTCTTTAGGGTACTCGTTCGTGAGCCGCCTCGGCCTCACCATGCATCGCAGCATGATGCACAAGGACGTGCGGCATGATGCACAAGGACGTGCGGGTGAGTGCAACTCTTTAGGGTACTCGTTCGTGAGCCGCCTCGGCCTCACCATGCATCGCAGCATGATGCACAAGGACGTGCGGCATGATGCACAAGGACGTGCGGGTGAGTGCAACTCTTTAGGGTACTCGTTCGTGAGCCGCCTCGGCCTCACCATGCATCGCAGCATGATGCACAAGGACGTGCGGGAAAGTGAGGAAGACGACGGCGACAAGAGCTCCGGTTTGTACTGCGCGGCGTGCGACGTCAAGTTCGTGTCGCTGGAGGCGCACCGCCGCCACATGGTCACCTCGGCCAAGCACACGCAGAACCAGGACTTTAAAAACGGTTGCCGCGTGTGCGGAGAAACCTTCCCTTGCGAAGAAGACCTTCGGCTTCACCACCGGCGCCTGCACGCGCGCAAGCGGCCCAAGAACTACGGCAAGAAGCCCTGCGCGCTCGCCTTCCCCACCGTCTGCCCGCACTGCCCGGAGAGCATAGACAACGCGCGCGACTACTGGGCGCACTTCCGGCGCGCGCACCCCGACAAGCCCTACCCCATACAGAAGAACTACGTCTGCGACATCTGCGGGAAAAGCTTCCggGGAAACGCATTCCTCACGTACCACAAACGCACGCACTCGGAAGAGCGCGCGTACAAATGCCTGCAGTGCCCGAAGGCGTTCTTCAACCGCACCAACCTGCAGATGCACGAAAAGACGCACTCCGACCTAAGGCCCTACCCCTGCTCCGTCTGCTTCAAGGCCTTCAAGGCTAAGGGCGCGCTCGACCGACACTACAGGAGCCACACCGGCGAGAAGCCGTACTCGTGCGAAGTTTGCGGCAAGGGGTTCGGGCAGTCCAACAGCCGCAAGCTGCACGTGCTGACTGTCCACCTGAAGCAGCCCGCGCCCTACCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGTGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTAGAGCGCAAGCCGCGCCCGCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGTGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTAAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCTCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGTGCAAGCCGCGCCCGCCCCCCCCTCAGCCCCTCCCGCCCTACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCCCGCAGCCCCTCCCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGTGCAAGCCGCGCCCGCCCCCCCCTCAGCCCCACCCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCCTCAGCCCCAAAGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTTAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCACACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACcCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGTGCAAGCCGCGCCCGCCCCCCCCCTCAGCCCCTCCCGCCCTACCCGCCCGGCAAGGCGCTCTACTAGACACTCAGCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCTCGAGCGCAAGCCGCGCCCGCCCCCCCCTCAGCCCCTCCCGCCCCTACCGCCCCACCCGCCCGGCAAGGCGCTCTACTAG
Protein Sequence
MEQVKVCRICLIMDVKMYDLRSHPLDLYSQSIETLTSMDLPPYACFVCAALIKNTYFFKEKCIQGQNALYNQINSIGMIIEQNIRNINRYQLNLVSSLKCDNICTDSTINITYEEPQIAIKDECNEDMGDDGQKYELELEFFKHEMDADEIRFSSDDEPLVLHKINKQKLKDKTHKNKGKKKKVDKTKLKIEDSSQLEESFSSEAAPAVATRKRGRPPKGSPASTAAPRSRRTANTGGVLDDDSNMEEYVTIVTLTGSPSPSPRSRRTANTGGVLDDDSNMEEYVTIVTLSKEEQLEEIEKRKTSSNYLNALYKCDFCYKGFIDDAAWKHHLSRHELRPGDVECEICKFRFKNKRHLSKHVSNHEKKYACKACPYVSKCTTQAKQHQRWHKGVTYKCQHCDEILSKWTSYLSHLRLKHPSEFICGVCGYSFVSRLGLTMHRSMMHKDVRHDAQGRAGECNSLGYSFVSRLGLTMHRSMMHKDVRHDAQGRAGECNSLGYSFVSRLGLTMHRSMMHKDVRHDAQGRAGECNSLGYSFVSRLGLTMHRSMMHKDVRHDAQGRAGECNSLGYSFVSRLGLTMHRSMMHKDVRHDAQGRAGECNSLGYSFVSRLGLTMHRSMMHKDVRHDAQGRAGECNSLGYSFVSRLGLTMHRSMMHKDVRESEEDDGDKSSGLYCAACDVKFVSLEAHRRHMVTSAKHTQNQDFKNGCRVCGETFPCEEDLRLHHRRLHARKRPKNYGKKPCALAFPTVCPHCPESIDNARDYWAHFRRAHPDKPYPIQKNYVCDICGKSFRGNAFLTYHKRTHSEERAYKCLQCPKAFFNRTNLQMHEKTHSDLRPYPCSVCFKAFKAKGALDRHYRSHTGEKPYSCEVCGKGFGQSNSRKLHVLTVHLKQPAPYQPAPYVSRARLERKPRPPPPSAPPAPTAPPARQGALLDTQQPAPYVSRARLERKPRPPPLSPSRPYRPTRPARRSTRHSAARALREPRAPRAQAAPAPPSAPPAPTAPPARQGALLDTQQPAPYVSRARLERKPRPPPLSPSRPYRPTRPARRSTRHSAARALRKPRAPRAQAAPAPPSAPPAPTAPPARQGALLDTQQPAPYPRAPRAQAAPAPLSAPPAPTAPPARQGALLDTQQPAPYVSRARLERKPRPPPPLSPSRPYRPTRPARRSTRHSAARALREPRAPRVQAAPAPPSAPPALPARQGALLDTQQPAPYPRAPRAQAAPAPPRSPSRPTRPARRSTRHSAARALREPRAPRVQAAPAPPSAPPAPPARQGALLDTQQPAPYVSRARLERKPRPPPPQPQRQGALLDTQQPAPYVSRARLERKPRPPPLSPSRPYRHTRPARRSTRHSAARALPPPAPTAPPARQGALLDTQQPAPYVSRARLECKPRPPPPSAPPALPARQGALLDTQQPAPYVSRARLERKPRPPPPQPLPPLPPHPPGKALY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-