Afus031935.1
Basic Information
- Insect
- Anania fuscalis
- Gene Symbol
- -
- Assembly
- GCA_950371115.1
- Location
- OX493352.1:6889139-6892722[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8 2.7e+02 3.3 0.1 2 23 57 78 56 78 0.92 2 19 1.8 1.8e+02 3.9 0.0 2 23 103 125 102 125 0.89 3 19 0.037 3.6 9.2 0.7 1 23 147 169 147 169 0.98 4 19 0.001 0.1 14.1 5.6 1 20 173 192 173 195 0.95 5 19 0.026 2.5 9.7 0.4 1 23 200 223 200 223 0.95 6 19 0.0095 0.92 11.1 2.5 1 23 229 252 229 252 0.96 7 19 0.2 20 6.9 0.0 1 23 300 322 300 322 0.95 8 19 4.5 4.4e+02 2.7 0.1 2 23 346 368 345 368 0.92 9 19 0.45 44 5.8 3.3 1 23 390 412 390 412 0.92 10 19 3.2 3.1e+02 3.2 1.3 1 23 495 518 495 518 0.94 11 19 0.085 8.3 8.1 0.0 3 23 542 563 540 563 0.94 12 19 0.014 1.3 10.6 3.8 1 23 585 607 585 607 0.97 13 19 0.00038 0.036 15.5 1.2 1 23 611 633 611 633 0.98 14 19 0.031 3 9.5 0.1 1 23 638 661 638 661 0.94 15 19 0.00055 0.053 15.0 1.6 1 23 667 690 667 690 0.97 16 19 0.36 34 6.2 1.8 1 23 697 720 697 720 0.92 17 19 0.00078 0.075 14.5 3.4 1 23 726 748 726 748 0.96 18 19 1.1e-06 0.0001 23.5 1.0 1 23 754 776 754 776 0.99 19 19 7.8e-06 0.00075 20.8 4.1 1 23 782 804 782 805 0.96
Sequence Information
- Coding Sequence
- atgagtttgttttttataggACCAGAAGATCCTCCACGGAAGAATTCACAATCACCAGTGAAGGTTAAGTGGAAACGAAAACGCAGAGTCGATGAAGACAAAGCAAACGCTGCTTTGATCTTGCAGTATTCGAACGCAGTGCCATTTAGATGTCAACGTGGGAAACTCATGTGTGCCTATTGCCAGATTAACTGTCCAGACATGATAGAGTTGAGGTTACATTCGGCGATCCATGACAAACTGGATGTATTGGAGAATCCTAACGTCCGTATCTCATTCCCTTTGAGAATCGATATCTCTGATTTGACTTGCACTATATGCGATGAAATTGCACTGACATTAAAAGATCTTCAGGTTCACTTAAGTCTAGTTCATGATAAAATCATAAATCAAAGTTACAGTGATGGTGTCATACCATTCGTACTAACCGGCAaagagtataaatgcgttctcTGTGAAATGTTGTTCGAAAGGTTTCTATCTCTGTTCGTGCATATGAACAATCATTACCAGAGTTATGTATGTCATACATGCGGCAAAGGATTTTCTGGAAAACACAAACTACGCGCTCACCAAACATGTCATGAATCCGGAGAATTCGCATGTACCAAATGTGATTTGGTATTCCTAAATCGTGCTACCAAAAACAGGCATATGTCAGTTGGACATGGACCTAAAGAGAGATATCGCTGTCCCATTTGTGATGCGCATTTTGATTCATATCATTCCCGATTGAGGCATTTAGACCGAATACACGGCCAAAAAGTAGAGTATCGCTgCTCCATCAACATCAATCTAAAATGGAAACCACGGCGCAAGTTTAACGATCACAGAGACAATGCAGCTATAATCATTGAGTGTTCAAACGCGTGTCCGTTTAGGTGGAAGCGAGGGGCGTTCACCTGTGCATTCTGTCCTCTCTCGTTCGGAGACCTCGCTGGTGTCAAGGAACATACCATAGAACACCCTAATCGAATAGAAGTGCTCCGTTACgcgagacagacagacagcattAAAGTTGATGTCACAGGACTAAGATGCGAACTCTGTCTCCAAGAAATGAAAGATATTGACACTCTTAAAGATCACTTGCTTATTACACACAACAAACCGATCAAGCAGGATATCGAATCTGGCGTTACCCCCTTCATAACAGATGGCAAAGAATTCATATGCACGCACTGCGACCAAAGATTTGAACTGTTctctaaaataaatacacacaaCAACCAGCATTATCCCAATAACATTTGTTTTGAATGCGgAAAATCTGGACATGTGCAAATTGCCGATGAAGGCAAAGAGATTTGCACCGTGCAGGCTGACAGGCAGGATATATCTGTGTCAACAGAGATGATTGCTGCCGCATTATTATCCACACCGCGAGAGACGGGCGATAAGAAACGTactttattcagaaaaaatattaccGTTCTTATAGAATCATCCACGGCCTACCCTTTCAAATATAGAAAAGGGACTTACTTGTGTTACTACTGTAAAAGCACATTCCTAGAGCCGGAAAAACTACGAGAACATAACAAAACTCAACATGCCAACGTCCAAATAACGGTTAAACCAAGAAAGTATGAACCATTGAAAATGGATTTCACGTTGACGGCTTGTAAGCTATGTGGTGTCAATATACCTGACTACGCAAATCTGAAGTTGCATTTGAAAGCTGAACACGATAAAACTATTGACTGCACTTACGGAGAATGTGTGCTACCTTACAAGTTGAGCAAAGACGAATACTGCTGTCAGATATGTGGGAAGCGATATGAGATGTTCCTCGGTCTACACAGACATATGAACGAACACTATGGACAGTATATTTGTGAAAATTGCGGAAAGAATTTTGTAACTCTACATAGAATGGTGAATCATGCTCGAACTCACGAGCGTGGGGTATTTCCTTGTAGACAATGTAAAGAGACCTTTCCGTCCTATGCTGCTATGTACGCCCACGTAGCCAAAATCCATAGGTCTAACAAGCGATACAAATGTCCTGTATGTGATGAAAAATTTGCTTCCTACAAACACCGTGTGAAACACCTGAGTTCGGTTCACGGGGAGAAAACTGCGGTATTCCCTTGTGCGCTTTGCCCAAAAGTCTTTGACCTGTGTAGCCGTAGGACATCTCACATTAAATTCCAGCATCTTCAAGAACGAAATCACGTCTGCCACGAATGCGGCATGAAGTTCTTCTCCAACTACGAACTGCAGGAGCATTCGATAAAACACAACGGCGAAAGGATATACCAGTGTGACGTTTGTAAAAAGTCATACGCCAGGTTAAAGACTCTAAGGGAACATATGAGGATTCATAACGATGATAGgagatttgtttgttttgtctgtGGCCAGTCATTCATTCAGAACTGTAGTCTTAAGCAACATATGAGAGTTCACCACCCCACTCATATAAAAAATGATCTCAGGATGTAG
- Protein Sequence
- MSLFFIGPEDPPRKNSQSPVKVKWKRKRRVDEDKANAALILQYSNAVPFRCQRGKLMCAYCQINCPDMIELRLHSAIHDKLDVLENPNVRISFPLRIDISDLTCTICDEIALTLKDLQVHLSLVHDKIINQSYSDGVIPFVLTGKEYKCVLCEMLFERFLSLFVHMNNHYQSYVCHTCGKGFSGKHKLRAHQTCHESGEFACTKCDLVFLNRATKNRHMSVGHGPKERYRCPICDAHFDSYHSRLRHLDRIHGQKVEYRCSININLKWKPRRKFNDHRDNAAIIIECSNACPFRWKRGAFTCAFCPLSFGDLAGVKEHTIEHPNRIEVLRYARQTDSIKVDVTGLRCELCLQEMKDIDTLKDHLLITHNKPIKQDIESGVTPFITDGKEFICTHCDQRFELFSKINTHNNQHYPNNICFECGKSGHVQIADEGKEICTVQADRQDISVSTEMIAAALLSTPRETGDKKRTLFRKNITVLIESSTAYPFKYRKGTYLCYYCKSTFLEPEKLREHNKTQHANVQITVKPRKYEPLKMDFTLTACKLCGVNIPDYANLKLHLKAEHDKTIDCTYGECVLPYKLSKDEYCCQICGKRYEMFLGLHRHMNEHYGQYICENCGKNFVTLHRMVNHARTHERGVFPCRQCKETFPSYAAMYAHVAKIHRSNKRYKCPVCDEKFASYKHRVKHLSSVHGEKTAVFPCALCPKVFDLCSRRTSHIKFQHLQERNHVCHECGMKFFSNYELQEHSIKHNGERIYQCDVCKKSYARLKTLREHMRIHNDDRRFVCFVCGQSFIQNCSLKQHMRVHHPTHIKNDLRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -