Afus031928.1
Basic Information
- Insect
- Anania fuscalis
- Gene Symbol
- -
- Assembly
- GCA_950371115.1
- Location
- OX493352.1:6870439-6872440[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.3e-05 0.0051 18.2 0.2 2 23 28 50 27 50 0.95 2 9 7.8e-05 0.0076 17.7 0.5 1 23 120 142 120 142 0.98 3 9 1.5e-06 0.00014 23.1 2.0 1 23 146 169 146 169 0.97 4 9 0.19 18 7.0 0.5 3 20 176 193 175 195 0.92 5 9 0.013 1.2 10.7 1.9 3 23 204 225 202 225 0.89 6 9 0.0001 0.0097 17.3 0.2 1 23 232 255 232 255 0.96 7 9 1.2e-05 0.0012 20.2 1.2 5 23 263 281 261 281 0.95 8 9 3.7e-06 0.00036 21.8 0.4 1 20 287 306 287 309 0.94 9 9 1.9e-05 0.0018 19.6 1.6 1 23 315 338 315 338 0.97
Sequence Information
- Coding Sequence
- ATGTACGCGGCGAGGCGGAACGCCGAGATTATGATGAGATATACTACGGCCTATCCGTTCAGGCTTCCGGAGTGTAATATAGTTTGTGTGTACTGTTACGAGAGCTTTACCAGCTCGGCTCTGTTCAGGCGACACATGGACAGTGAGCACGAAGACTTTCCTGTGCACGAAGCGTTTTCCCACATCCCAGAAGGATACGGGAAAGTCGATTGTACAGAGCTTCGATGTCGACTGTGCTCTCACTCGCAAGATGACCTTAAAAGAGCTGCAGAACATCTGATACGAGACCATACCATATCCGGTCTCAACTTGAAATATGATCTCGGTATGCAACCGTTCAAGCTAGACGACGTTCGCTATATGTGCGCGATATGTGACGAGAAATTCTCTGGTCTCCGTTCGCTAAGTAGACACACGCAGAGCCACTTTTTCAAACATACGTGTGAGTCATGCGGAAAATCGTATTCAACGTTCTCTTCACTAAAAGCTCATTTGCGAGTCTCTCATATAGGCGACAACAGGCTTTGTAGAAAATGTAAAATGACATTTAAGACTGTAGAAGCAAGAAGGAAGCACTGGAATGAATCTCCCCAGTGCTGGGCTCATTTGTGCAAAATTTGTGGTGAACGGTTTATGACGTGGAACCAGAGGAATACTCATAAAACACAAGTTCATGGAATGCAATCGAAAGAGTACCCCTGCCCTGAGTGCCCAGAAGTTTTCCCGGACAGGCAAAAATACAGGACCCATTTTATTACAACTCATACTGACGACTACTTCTCATGCACATGTGGAAAGAAATTTGAATCGAAATCGAATCTGAAAAAGCACATGGTTGTACACACGAAGGAAAAGTTGTTTCCATGCACAGTTTGTTCGAAAGCCTTTTCTAGAAAAAAGAACTTGGTGCAGCACATGTGGATTCATAGTGAGCGTAAGAGATTTGAATGTGTTGACTGCAACAAGCAGTTTAATCAGAAGGTTACCTGGAAATCGCATATGAAGTCCTATCATCCAGGCGTCGTTATAAATTAA
- Protein Sequence
- MYAARRNAEIMMRYTTAYPFRLPECNIVCVYCYESFTSSALFRRHMDSEHEDFPVHEAFSHIPEGYGKVDCTELRCRLCSHSQDDLKRAAEHLIRDHTISGLNLKYDLGMQPFKLDDVRYMCAICDEKFSGLRSLSRHTQSHFFKHTCESCGKSYSTFSSLKAHLRVSHIGDNRLCRKCKMTFKTVEARRKHWNESPQCWAHLCKICGERFMTWNQRNTHKTQVHGMQSKEYPCPECPEVFPDRQKYRTHFITTHTDDYFSCTCGKKFESKSNLKKHMVVHTKEKLFPCTVCSKAFSRKKNLVQHMWIHSERKRFECVDCNKQFNQKVTWKSHMKSYHPGVVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00076905;
- 90% Identity
- -
- 80% Identity
- -