Acro026158.1
Basic Information
- Insect
- Anania crocealis
- Gene Symbol
- -
- Assembly
- GCA_949315895.1
- Location
- OX438876.1:9560525-9578187[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.037 4.1 9.3 0.7 3 23 262 283 260 283 0.92 2 13 0.23 25 6.8 1.8 2 23 291 311 291 311 0.96 3 13 1.2 1.4e+02 4.5 0.9 2 23 316 337 315 337 0.94 4 13 0.00029 0.032 15.9 0.7 2 23 346 368 345 368 0.95 5 13 0.0054 0.6 11.9 1.2 1 22 402 423 402 423 0.94 6 13 0.024 2.6 9.9 0.4 1 23 428 451 428 451 0.93 7 13 2 2.2e+02 3.9 0.1 3 20 462 479 461 481 0.90 8 13 2.3 2.5e+02 3.7 0.4 2 19 489 506 488 511 0.76 9 13 0.0092 1 11.2 2.4 3 23 518 538 517 538 0.96 10 13 0.0003 0.033 15.9 3.7 1 23 588 610 588 610 0.98 11 13 7.9e-05 0.0088 17.7 0.7 1 23 616 638 616 638 0.96 12 13 0.0057 0.64 11.9 4.4 1 20 644 663 644 666 0.93 13 13 0.0013 0.15 13.9 3.8 1 23 672 695 672 695 0.94
Sequence Information
- Coding Sequence
- ATGAGGAATTGTCGTCATATGGTTCCCGATCGCAGTCGGAAGGAACTATATTTAGTTGGCAACAACAACGGAAGCCAAGTAATTTTGTCAAGACATTTAGGGGCGGTCGCAGGGGTTTCTCGAGCCGGCAAGGCTTTCGAGGTGGCCTTAGTGCGGGCGGCGGTCATTATCAGCCGCGCCAACAGAATCAAAACCCCGGGACGTCGCGCCAGGTCAACTACGGCCGAGGACGTACATTTTATCGCGGAACTACTCATCAAGATATTTGAATCGGACAACCTCCCTCAACACATCTGTAGTGTCTGCTACACGCAGCTAAAAAAGTTTGTCTCATTCCGGACCCGATGCGTTATGGTGCAGGATTTGTTGGACGATCTTCAGCTGCAAGGGGTTAAGCTAACAACAAAATTCATTACAAGCATCGATCGTAGTAAGTATAATTTACTGCTGAACCTCAGTACGTGTATTCCGCCAGAAGGTTTGGTTATCGAACATGAAGAGGAAGTTCCCATCCCAGATGACATTCAGGATAGTCAAGAACCAGAGCCTCTATCTCCTCTAACAGAGGACGTACCACTCCCACCTCCCACCACAATAGatacagaaaaacaaaaaaaagatgttCAATCAAAAAGGAGAAAAAAATTCGATGATCCCAAATACATCGAAGATTTCGAACGGAAATATAATGCTAAAGTAGAAATTTTGAGTTTAGACAAACAAATTGAAGAACTGAAAAATAAAGTAGAGCAAGTCTCTTCAAATAAACGGATCAGAACTTCCTGTATCGACTGTGGTAAAGCACTTTTTTCAGAAGAAAGCCTACAGTCGCATATAAAGATGTGTCATGATGAGTCCGCTGGACCAGAGCAGTGCGAAGTATGTCTGTGCCGTTTCACTTCTAAGCAGTTGGCCAAACATGTGTTAATTCATAAACTGAAAATTACATGCAGACAATGCGATGTTAGACTAAGCACTCCATACAAAGCCGTACGCCACTACCATGAACACAACATGCCGAAggaatataatattaagtgtaACTATTGTAGAGAAAAGTTCGATAAGAAAGCCTCGCTGAACGATCATATAAAACTCGAACACCCGGACAAGCTTCTATGGTGTAAATGCTGTGGGGAGACCCTTGTACACATACGAGGTCTAGCATTCCACATGAGAAAAGTTCACAGCGACTTATTGAAGCATAAATGTCAAGAGTGTAATGTTAAGTTTGCATCATTGGAAGCATTGTATAAACATTTGCATACAACAAGTGAACTACACGTCTGTGTTATGTGCGGTGATAGTTTTAAATCTGATTCGTTGTTGAAAGATCACGTTGTGAAAGAACATGCTAGATCAAAGTTTATTAGGTTGGCTCACTGCGACGGTTGTGGTGTGAAGTTCTTCGGGACAGAGCCTTTGAGTAAACATTTGGAGGAGAATTCCTGTGGGAATGGCAGTCCATGTCAGCTCTGCGGTGTCACATTTCCAAATTCACAAATCATGGAGGATCATAAGCACGAATTCCACACGAAAGTGTACCGAGCTTGTGAGAGTtgtgACAAAGCCTTCGACTCGCATAACTACCGGCATCATATACTACGCGTTCACAACATCAAGCCTCCAGCGTACCAAAGAGGTATATCCGAACTGACAGCGACTAAGATGTGGTCGGTACATGGCAACATTATCAAAGGCGTCTCAGTATCTTCTCGATCAGACCCACTGCGCACGGGCAACGACGAACCTAAGCGCAACTACATATGTGAACAATGCGGGAACACATTCCACAAACACGAATATTTGAAGGTTCACATGCGCGTTCACTCCGGCGAGCGGCCTTATAAATGCCAGTTCTGCGGAAAGGGGTACATCAGGAAGAGTAGTCTTCAGGGCCACGAGTTGCTCCACACCGGCGAGCGTCCGCACGCGTGCCACGTCTGCCCGAAGCAGTTCCGGAAAAAGGCCGCCCTGTTGAGGCATTTGACGTGTCATTCGGGATTGCGCCGCCACATCTGTCGAGTTTGCGACAAGTCGTTCCGAACTTCCACATGCGTTAAAACACACATAAAAGCTGTACATTTGAATATACCAGTCAGAGGTCCGAGGAAAAGGGAATTTATGAAACAGACGAGCATGAACCCGAATATATTTATAGCTCAAAATAGTACTGAACAAGGCAATGATAAAAGCGAAGATGCGTCATCAGATGAAGAAGGTCAGAAGAGTATAGTGTTACACAGCAAGCAAATAGATAATTATAGAATCATTGACCTACAAGATATAGCTGATACAGCTGAAGGAGATAGCGAGGTCCCTGCTCGTCGTATTACGAAAATTGTTAACTTAAGACGTAGGAAACCAAATTTGAAAAACATGCCAaaagataatgaaaataaatatttcaacacACATCATGAATCAAGTAAAGCTGTTTTGTCTATACAGAGACAAATGGAAAAAGATGATGAAGAACAAATGTATATGGACACAAGTTCTCAGGACTTTACAGATGATCTTCCAACGAGAGATGACAATGAAACACAGGAATTGGTATACAGCACTCTTAACAGGAATGTGGAAACGGAACATCTTCTAAACAAAGCGAAGGGTAAAAAGAGGGGAATACAAAGTATTAGTATGCCGTCTTTGGATTGTGAGACAGAAGATGGTCGAGGGCATATGAACAGTGGACAAGTAACAAGTGTTCGTGACACGCCCAAGGATATTGTTTTGAAACAAGACATTGGTGGGAAAAGGAAGTTTATTATAGTATCTAGTGCGGCTAATAAACGGACTttgaataagaaataa
- Protein Sequence
- MRNCRHMVPDRSRKELYLVGNNNGSQVILSRHLGAVAGVSRAGKAFEVALVRAAVIISRANRIKTPGRRARSTTAEDVHFIAELLIKIFESDNLPQHICSVCYTQLKKFVSFRTRCVMVQDLLDDLQLQGVKLTTKFITSIDRSKYNLLLNLSTCIPPEGLVIEHEEEVPIPDDIQDSQEPEPLSPLTEDVPLPPPTTIDTEKQKKDVQSKRRKKFDDPKYIEDFERKYNAKVEILSLDKQIEELKNKVEQVSSNKRIRTSCIDCGKALFSEESLQSHIKMCHDESAGPEQCEVCLCRFTSKQLAKHVLIHKLKITCRQCDVRLSTPYKAVRHYHEHNMPKEYNIKCNYCREKFDKKASLNDHIKLEHPDKLLWCKCCGETLVHIRGLAFHMRKVHSDLLKHKCQECNVKFASLEALYKHLHTTSELHVCVMCGDSFKSDSLLKDHVVKEHARSKFIRLAHCDGCGVKFFGTEPLSKHLEENSCGNGSPCQLCGVTFPNSQIMEDHKHEFHTKVYRACESCDKAFDSHNYRHHILRVHNIKPPAYQRGISELTATKMWSVHGNIIKGVSVSSRSDPLRTGNDEPKRNYICEQCGNTFHKHEYLKVHMRVHSGERPYKCQFCGKGYIRKSSLQGHELLHTGERPHACHVCPKQFRKKAALLRHLTCHSGLRRHICRVCDKSFRTSTCVKTHIKAVHLNIPVRGPRKREFMKQTSMNPNIFIAQNSTEQGNDKSEDASSDEEGQKSIVLHSKQIDNYRIIDLQDIADTAEGDSEVPARRITKIVNLRRRKPNLKNMPKDNENKYFNTHHESSKAVLSIQRQMEKDDEEQMYMDTSSQDFTDDLPTRDDNETQELVYSTLNRNVETEHLLNKAKGKKRGIQSISMPSLDCETEDGRGHMNSGQVTSVRDTPKDIVLKQDIGGKRKFIIVSSAANKRTLNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -