Acro024464.1
Basic Information
- Insect
- Anania crocealis
- Gene Symbol
- zfh1
- Assembly
- GCA_949315895.1
- Location
- OX438875.1:801462-806125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.048 5.3 9.0 4.3 2 21 175 194 174 195 0.93 2 18 6.9 7.6e+02 2.2 1.1 1 23 228 251 228 251 0.88 3 18 0.0013 0.15 13.9 5.4 2 23 257 278 256 278 0.96 4 18 0.0084 0.93 11.3 0.8 2 22 282 302 281 302 0.96 5 18 0.0048 0.53 12.1 0.6 2 23 346 368 345 368 0.95 6 18 0.044 4.9 9.1 0.6 3 23 376 395 375 395 0.77 7 18 0.01 1.1 11.1 1.6 1 23 401 423 401 423 0.98 8 18 0.00072 0.08 14.7 1.4 1 23 429 452 429 452 0.97 9 18 0.015 1.7 10.6 0.5 1 23 460 483 460 483 0.91 10 18 0.0027 0.3 12.9 5.1 1 23 492 514 492 514 0.98 11 18 0.012 1.3 10.9 0.8 2 21 615 634 614 635 0.95 12 18 0.7 78 5.3 0.7 1 19 666 684 666 685 0.86 13 18 0.0056 0.62 11.9 1.9 1 19 697 715 697 720 0.91 14 18 0.051 5.6 8.9 2.2 2 21 724 743 723 744 0.90 15 18 0.0051 0.56 12.0 2.9 1 23 755 778 755 778 0.95 16 18 1.6e-06 0.00018 23.0 1.1 2 23 785 806 784 806 0.97 17 18 0.0079 0.88 11.4 3.3 1 23 813 835 813 835 0.98 18 18 0.017 1.9 10.4 1.7 1 23 854 877 854 877 0.95
Sequence Information
- Coding Sequence
- ATGAGTAGAGAGATAGATGTGAAAGCGTTAATTTCGCATTTGGTGCGTGGAGATGGGGCCGACAAATGCCGAATATGTATGGGTGAAACGTCAGAAGGTCAAGTTTTTCTGGGAGACACCGTGATGATGGACGGAGACAAGCCAGTCACCCTTGCAGACCTCCTGGAGCTGGTTACGGGCGTCGAGGTACTGGAGGATGTGTACCTGCCGCAAGGCCTGTGTTGGATATGCACCGGGTCAGCAGTAGACGCTGCTAACTTCTCAACGCTCTGTAGGAAAGCAGAGGACCAATGGGATAAGATGTTGCAGTTGCTAGGCAACCTTCCATCACTGGAGAAGGTGCCTAATAATTGCAAAGAACTGTATGCTATTTTAGATGATGATCAGATTACATTTCAAACAAATGAGGTGATGGTTAAACGTGAGGTAGAGCCAGAAAACAATCTGCTTATAGAGAAGTCACGGAATGCAACAACGCAATCGTTAGTAAGAAAAGTtaagaagttaaaaaaattgCGATGCCAATGTCCGATGTGTGATAAAGAGTTCCGATGTGCTGAACATTTGTCACAACACTTAAAATATTCCTCCGACCTCAAGAGAGCATGTCATATTTGCACAATGATAATGCCAAGAAATGATTTGGTTCATCACTTAAAAGTTGTGCACAGAACAGAGTTGTTTCACTGTAAGAAATGTCCAGCTCTATTTCTATCGaagattaaatatttaaaacacatcATTGCAGATCATGCTGCAGGGGCCTGCACATGTGGAGACTGCGGTCGTAGTTTCCAATCGAACCATGCTTACCATGCTCACCAAAACATGCACATTCCTAAAACTTGTCCAGGCTGTGGCAATGTCTATCGTAACCAGCCATGTTATATTCACCATGTCAGAACATGCTGTAATTTAGATAAGAACCGTAAAGACACTCATAAGACCAAAAGTAAAGTGACTATTGAAGTAAAAAACAAACTAAGCAAAAGAAATGTAAGAGTAGGGCTCAGAGGTAGCGCTCAGAACGAGTGTATATGTGACTActgcaacaaaaagtttgcagGTAAAAAGTTTGTTGCTGCCCACATCCAAATTGTACATCTGAAGAATACACACCGACCTTGTCCGTACTGTGGGAAACAATTTGCGTCAGCTCATATGCCAACCCACATGAAAAGCCATGACAAAACAACTTTATTCAAGTGTCAATATTGCAACCTCGTTCTCAAAACTAGGCTAGGATTCAGTCAACATTTGCGATTGCATACTGGTGAAAAGCCGTATCCATGTAAGCATTGTGGTGAGACATTCTCAGCGTCTTCTAGAAGATCAGAGCACATACGGAAAGTGCACAATGGCGATAATACTGATAAGCATGCTTGTAGTTTATGTCCAGCTCGCTTTTCGTTTCCGTTCCGGTTGAAGAAGCATATCGCCGATGTACATAGTGAAACAGCGGATTCCGTACTGTTTGAATGTCCGGAATGCTTCGAGAAGTTTAGAACTTGTAGAGGACTGATTCATCACAGTAGAAAGCATCAGCAAGGCGTTGATCTGTCGCCGTCCCTGCCCACGATGGTCTGCTCCGGCTGTGTCAGCACCGCTATGAAGGCGGTGCCATTTATCCAGCTCTGCCTCAAGTCCCAACACAAATGGCATCAGATCACCAACTATCTGACCGATCTAGAGGTCGGCCAAAAAGATAGCGTTTGCGTTCTCATTGGCGACGAAATCAAACTAGTCGATTATACTAGAAGAAGCAAACATGTCACTAAAAAGCAAATATTGAGATTTTTGAAATCTAAGAATAAGATAGAAACGACTATTCCAAGTCAGTTGAAGTGTCCCGAATGCGATAAGAGGCATACAACAGTGTTTCAATTGAATAAGCATATAAAAGATCTTAAAGTTAGGATGTGTATATATTGCAAGAGTCTGGTCCCTACTGATAATTTCACAGATCACGTTAGGATACTTCACAAAGCAACTGTCTACGCTTGTAATACGTGCAAAAGGATTTTCAGAATGAAAAGAAGATATGTAGATCATAAGCCGGCATGCAAACGAAAGTATAGTAACGGTGGCTATGTTTGCTTTATGTGCAAGAAGAGTTTCGCCTCTGAGATGAATTTGATCGTTCATTGCTCGAGTAAGCACAATCCGCAGGTATGTCGCGGGTGCGACAAGAAGTTTACGAGCTGGCAATGTTATATGTATCATTCCAAACGTTGTGCTTCCTCAAAATTAGAGCCCGCCAAATACATTTGTGATTATTGTTCCAAACAGTACCGTGTTAAGAACGCTTTGAAACTCCATATACAGTTCTGTCACACTGTTGGTTGGCAGCTTCAGTGTGAGCAGTGCGGAAAGAAGTTCTCGAACCCGGCACATTTGAAGGAACATGGCAACACACACAATAGGGTCGAGGATAGATATGTTTGCAAGATTTGTAACGCGAAATTTAGCACTAGGAGGGGTCACGAGAGACATTTAAAGCGGCATTTTGACGAACAGGGCAAATTAACAGAGTACGCCCTTCGTCGGCGGCGTAAAGTATACATGTGCGTTATGTGCAATCTGACATACGGATTACAAAAATCGCTGAAAAGACATCTTAAGTTCAAACACGGGGCTGTAGATTATGTAGAACTGGAATAG
- Protein Sequence
- MSREIDVKALISHLVRGDGADKCRICMGETSEGQVFLGDTVMMDGDKPVTLADLLELVTGVEVLEDVYLPQGLCWICTGSAVDAANFSTLCRKAEDQWDKMLQLLGNLPSLEKVPNNCKELYAILDDDQITFQTNEVMVKREVEPENNLLIEKSRNATTQSLVRKVKKLKKLRCQCPMCDKEFRCAEHLSQHLKYSSDLKRACHICTMIMPRNDLVHHLKVVHRTELFHCKKCPALFLSKIKYLKHIIADHAAGACTCGDCGRSFQSNHAYHAHQNMHIPKTCPGCGNVYRNQPCYIHHVRTCCNLDKNRKDTHKTKSKVTIEVKNKLSKRNVRVGLRGSAQNECICDYCNKKFAGKKFVAAHIQIVHLKNTHRPCPYCGKQFASAHMPTHMKSHDKTTLFKCQYCNLVLKTRLGFSQHLRLHTGEKPYPCKHCGETFSASSRRSEHIRKVHNGDNTDKHACSLCPARFSFPFRLKKHIADVHSETADSVLFECPECFEKFRTCRGLIHHSRKHQQGVDLSPSLPTMVCSGCVSTAMKAVPFIQLCLKSQHKWHQITNYLTDLEVGQKDSVCVLIGDEIKLVDYTRRSKHVTKKQILRFLKSKNKIETTIPSQLKCPECDKRHTTVFQLNKHIKDLKVRMCIYCKSLVPTDNFTDHVRILHKATVYACNTCKRIFRMKRRYVDHKPACKRKYSNGGYVCFMCKKSFASEMNLIVHCSSKHNPQVCRGCDKKFTSWQCYMYHSKRCASSKLEPAKYICDYCSKQYRVKNALKLHIQFCHTVGWQLQCEQCGKKFSNPAHLKEHGNTHNRVEDRYVCKICNAKFSTRRGHERHLKRHFDEQGKLTEYALRRRRKVYMCVMCNLTYGLQKSLKRHLKFKHGAVDYVELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -