Acro025132.1
Basic Information
- Insect
- Anania crocealis
- Gene Symbol
- -
- Assembly
- GCA_949315895.1
- Location
- OX438875.1:6862293-6867715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0021 0.23 13.3 0.2 2 23 207 229 206 229 0.94 2 10 0.0097 1.1 11.1 0.4 2 23 255 277 254 277 0.95 3 10 0.073 8.1 8.4 0.4 2 23 301 322 300 322 0.95 4 10 5.2e-06 0.00057 21.5 2.0 1 23 326 348 326 348 0.99 5 10 0.0065 0.72 11.7 1.7 1 13 353 365 353 367 0.93 6 10 0.00021 0.024 16.4 3.5 3 23 386 407 384 407 0.95 7 10 6.4e-06 0.00071 21.2 1.3 1 23 414 437 414 437 0.98 8 10 0.0059 0.65 11.8 0.6 1 23 443 465 443 465 0.97 9 10 1.2e-06 0.00013 23.5 3.3 1 23 471 493 471 493 0.99 10 10 5.1e-05 0.0056 18.3 1.5 1 23 499 522 499 522 0.97
Sequence Information
- Coding Sequence
- ATGGACCGCACTAGGCGCGTTCTGCTCCTGCTGTCCCATAGTACGGGACGCTCCTCGACTAAGATTGTATTCGGTGAGTGCGAGGGAAACAGCGGTATCTGCGATGTGTGCGTCAGCCGGCTGCGAGACGCGAGCAACTTCAAGCTTCAGGTACTCCATTGCCAGCGCGAATTTGCAAACATGAAGGAGTTACTTGAGTATGACAAATTCCCACTAAAAGTAAAGGAAGAAATAACCGATCCAGATGAAGAAAATGGAATGTCATTTTTAGAACTTAAAGACGAGTTATCGGAGTTCGATGATATGAAACacgaggatgatgatgatgacgatgacaaGAATCTGGCTGAGATACTCGGCTTCGATGGCGAAACGGTGAAGAAGAAACTGTCGAAGAAACGGCACAGCAAGAGACGATTGGCACTCGATAAAGGCGaaaaaaaactcCTGAACAGACCTATCAAGCTGTCCCTGCGCGCTTTGGCCCAGATGGACAAGCTGAACAAGCCGATGTCAATACGGTACGTAAGCGAGAACAAAATGCACAAATCAAACGTCGAAAACATCCTCAAATACTCAAACTGTACGCCATTCTCAAACAAAACTATAGCGGGGATAACCTGCGCGTATTGCAAAGAAACATACCAAGATCCAGAAGATTTAAGAAGCCACACGCAAGAGAACCACAAGAACGACGAATTGAACGACAACAAAAGAATGGATAAAAACAATCTGTCCATCAAAATTGATATAACCGATCTTAAATGTACTTTATGTAATGCAAAATCAACGACAATCGCAAATTTAAAGGTACACCTAACAAAAGAACACGACATCAAATTCTATACGGACGTGAACGACTACATATTAGAATTCAAACTGACCGCCTCAGAGATCCTTAACTGCGCATTGTGTAACTCCACATACGAGACATTCAAAATGCTTCTACAACATATGAACGGGCATTACCGGAACTATGTTTGCGAGGAATGCGATATGGGCTTTATAAACAAACATAGACTTAAAAATCATCAACGCACGCATGATATAGGTACTTTCAAGTGTTCATACTGCGACAAAGTGTTTACCACACGAGTGAGGAAAGCATGCCATGAGAAATATACACATAATACGAGTGTTAGGTACACAACAAATTGTCCACACTGCGATCAGTCCTTTACGAGCTACTATCAAAGGAACAGGCATATGTTCAAAGAGCATAATCAAGTGGCGGCAAGTTACAAATGTAATATATGCGTCAAAAGTTTTATATTGAAATCAAAACTCACGTCTCATATAAAGAAAGTTCATTTGATGGAGCGCAATCACACTTGCGCTGAATGCGGGCAGGGTTTCTTCATTAAACAATCTTTGGACGAACATATGATTAAGCACAACGGTGAAAGAGTGTTCAAATGTACGGTATGCCATAAGGCGTACGCGAGAAAAAAGACTTTAAGAGAACATATGCGGATCCACAATAATGATAGGCGGTTTAAATGCGGTGTGTGCGGGTCGGCGTTCGTTCAGAAATGTAGTTTGAAGAGTCATATGTTGTCTAACCATGCGATAACGTTATCTGAGTATGAAGCGGCTAGAAGCGAGATAAGTAGTCCATAA
- Protein Sequence
- MDRTRRVLLLLSHSTGRSSTKIVFGECEGNSGICDVCVSRLRDASNFKLQVLHCQREFANMKELLEYDKFPLKVKEEITDPDEENGMSFLELKDELSEFDDMKHEDDDDDDDKNLAEILGFDGETVKKKLSKKRHSKRRLALDKGEKKLLNRPIKLSLRALAQMDKLNKPMSIRYVSENKMHKSNVENILKYSNCTPFSNKTIAGITCAYCKETYQDPEDLRSHTQENHKNDELNDNKRMDKNNLSIKIDITDLKCTLCNAKSTTIANLKVHLTKEHDIKFYTDVNDYILEFKLTASEILNCALCNSTYETFKMLLQHMNGHYRNYVCEECDMGFINKHRLKNHQRTHDIGTFKCSYCDKVFTTRVRKACHEKYTHNTSVRYTTNCPHCDQSFTSYYQRNRHMFKEHNQVAASYKCNICVKSFILKSKLTSHIKKVHLMERNHTCAECGQGFFIKQSLDEHMIKHNGERVFKCTVCHKAYARKKTLREHMRIHNNDRRFKCGVCGSAFVQKCSLKSHMLSNHAITLSEYEAARSEISSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01282655;
- 90% Identity
- -
- 80% Identity
- -