Acro025151.1
Basic Information
- Insect
- Anania crocealis
- Gene Symbol
- -
- Assembly
- GCA_949315895.1
- Location
- OX438875.1:6988178-6992747[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00066 0.073 14.8 0.3 1 23 20 43 20 43 0.97 2 14 0.078 8.6 8.3 3.2 2 23 50 72 49 72 0.90 3 14 8.6e-06 0.00096 20.7 1.4 1 23 80 103 80 103 0.95 4 14 0.17 18 7.3 1.5 2 17 107 122 106 123 0.92 5 14 0.045 5 9.0 0.1 2 23 134 156 134 156 0.95 6 14 1.1e-07 1.2e-05 26.7 1.3 2 23 163 184 162 184 0.98 7 14 3.2e-05 0.0036 18.9 4.8 1 23 190 212 190 212 0.99 8 14 0.0038 0.42 12.4 3.4 1 23 218 240 218 241 0.96 9 14 1.4 1.6e+02 4.3 0.1 1 23 278 301 278 301 0.92 10 14 0.0087 0.96 11.3 2.0 1 23 317 340 317 340 0.93 11 14 2.7 3e+02 3.5 2.5 1 23 370 393 370 393 0.89 12 14 0.00082 0.09 14.5 0.7 2 23 400 421 399 421 0.96 13 14 4.8e-05 0.0053 18.4 0.6 1 23 427 449 427 449 0.98 14 14 1.6e-05 0.0018 19.9 1.7 2 23 456 477 455 478 0.94
Sequence Information
- Coding Sequence
- ATGCGCACAAGTAAGGACGTGGACGAATATGTGATGGAGGCAGTGACAGACGGAAAATTCACTTGCAAGGCTTGTGAGCTCGCGTATAAGCGGTTATCTGACCTACGCTACCACATCATCAGAGCCCATCTAAAACAGAAGTTCATCAAATGCTCTCACTGCCCCGAAACTTTCATGTACCACAGTCAAAGGAAAGATCACGTCTCCGCAAAACATTCCAAAGAAATACCCGATAAGTTTGTTTGCGCGCATTGTGATAGAAAGTTCAAAAGGAAAAACACTCTAGCTGAACACATGATGGACGTCCACATTGAGAAGAAATGCCGTCACTGCGATGTGAAATTCGTCCGTAAAAGATATTTGTTCCACAATAACGAGGTACATGGTGTTTCGATGCCTACATGTGGTGTTTGCGGGTTGAGAACACTGACAAATGGCGCACTCGTGCGTCATCAGAGAAACGTGCATTTAAACGAAAGGAATAAGAAATGCCAGCTATGCGGGAAGATGTTTTACACCCAATCGAACCTGCAGGATCATATGATCACTCATGAGCAGAACAGGGTGTTCAAATGCGATGTTTGTTCGAAGAGTTTTGCCAGGAAGGAATGTTACAAGTCTCACTACCGCATTCATACGGGAGAGAAGCCGTTCTCTTGCAAGTTCTGCTCTGTCTCTTTCGTCCAGCGGGCCAGCTTGAGGTTTCATATCAGGAGCCACCATCCAGGATCTGTGCGGAAGAATCAAGGAAATGATGATACCAGTCGCTACGCTTCCCTGGTATGTACTGACGAGGTCAAGACGATCAAGTTGGGTTTCCGATCAAACAAACACATTTGCCAGTTATGCGAGGCCACCTATGACTATCTTTGGGCCGCGAAAAATCACATACTCTTGGCACACGTAAACGACAGCCGTGGTGAAAACACAAACCCAGAAGGAATAGATTATTTCTGCAATATCTGTATGAAACGTTTTGAGTCACAGCACAAATTGCTGGTTCACTTGAGTGCGACACACGCGGCTGGGCGATGTCAAGAATGTATGGAAAAAATTCCCAAAACTAAGATGACACGCCACAGGCATGAAGCCCACGGCGCTGCGAAGCACACTTGCGGTATTTGCGGGTACAAATGTTTGTTGCTCAACCGACTCATCCAGCATCAGAGGCAAGTGCATTTAAAAGAGAGGACAGTGCCATGTCCGAGATGCGACTTAAAGTTTTACGATAGAATACACATGAAGCTGCACATGGTAACCCACGATCCTGTGAAGCAGTTTGAGTGCCAGTACTGCAAAAAGGCATTTCCGAGAGTAAAAGCGTTGAAGCTGCACGAGAAGATTCATCAGGGAGTGAAGGATAAAGTATGTGCGATTTGTGATCAGCGGTTCGTTCAGAAGGCGAGCCTGAACTATCATATGAAGAAGCACCATCCACAGTCCCTGTGa
- Protein Sequence
- MRTSKDVDEYVMEAVTDGKFTCKACELAYKRLSDLRYHIIRAHLKQKFIKCSHCPETFMYHSQRKDHVSAKHSKEIPDKFVCAHCDRKFKRKNTLAEHMMDVHIEKKCRHCDVKFVRKRYLFHNNEVHGVSMPTCGVCGLRTLTNGALVRHQRNVHLNERNKKCQLCGKMFYTQSNLQDHMITHEQNRVFKCDVCSKSFARKECYKSHYRIHTGEKPFSCKFCSVSFVQRASLRFHIRSHHPGSVRKNQGNDDTSRYASLVCTDEVKTIKLGFRSNKHICQLCEATYDYLWAAKNHILLAHVNDSRGENTNPEGIDYFCNICMKRFESQHKLLVHLSATHAAGRCQECMEKIPKTKMTRHRHEAHGAAKHTCGICGYKCLLLNRLIQHQRQVHLKERTVPCPRCDLKFYDRIHMKLHMVTHDPVKQFECQYCKKAFPRVKALKLHEKIHQGVKDKVCAICDQRFVQKASLNYHMKKHHPQSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -