Acro025174.1
Basic Information
- Insect
- Anania crocealis
- Gene Symbol
- -
- Assembly
- GCA_949315895.1
- Location
- OX438875.1:7121825-7127942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.063 7 8.6 1.2 1 23 212 235 212 235 0.94 2 11 0.12 14 7.7 0.1 2 23 262 284 261 284 0.95 3 11 0.00095 0.11 14.3 1.6 1 23 306 328 306 328 0.98 4 11 0.00083 0.091 14.5 0.1 1 23 332 355 332 355 0.98 5 11 0.00051 0.056 15.2 0.7 1 22 360 381 360 383 0.87 6 11 0.059 6.6 8.7 2.5 2 23 390 412 389 412 0.90 7 11 0.0035 0.39 12.5 6.3 1 23 419 441 419 441 0.98 8 11 0.0045 0.49 12.2 1.9 2 23 448 469 447 469 0.97 9 11 1.7e-06 0.00019 23.0 1.3 1 23 478 500 478 500 0.98 10 11 4.9e-06 0.00054 21.5 0.2 1 23 506 528 506 528 0.98 11 11 4.7e-06 0.00052 21.6 0.9 3 23 538 558 537 559 0.96
Sequence Information
- Coding Sequence
- ATGGATTATATATATAGTAAGAAAACTCAAGCTAAACGTTCGTATGATTCTGACGATGCGACTATTTATGGGCACTGTCGATGTTGTTTAGAGGAAGGTGATCACCGAGATATCACCAAAGTTTACGTCGGCAGTGGTGCAAAGGAAATCTATGCTGATATATTTTTAGactgttttaatgtttttCTCTCAACGAACACAAACCTAAGCACATTAATATGTTCGGCCTGTGTGACTCGGTTGCGAGAGGCGCGGGATTTCAAGGCACTCGTGTTACGGACAGAATCTCACCTAATGGATGCATTGCAGAATTGTGATAAGGAGCAAATGATTCTTGTCAATGtACCAGTTGCGAAGGATACTTTAGACACAACAATCGgctttaaaatacaagtcaatAACATTGATAACACGGCAAAGATTAACAAAGAAGCAACTACCAAAGTAGTTGCAGATAgtaaccctaaaaatgatgCTGAAATGGATTCAACTAAAACTGCCAAGCAGAAAAATCCCAAAAGGAATTTGGACTTGGAAACGAAGAGACCTCTTAAAAAAGCACTGATATTAAATACTTACCAACTACTTGTACGTTCGAACGCTACTCTCTTTAAGAGCAAAATGCGGTTTGGTTACCCCTGTTTCTACTGTAGAGACATATTCAAAGACTTTGAACTTCTTAAGCAACATCAGACCGAACAACATGTTAAGACTGATCTATTGAAGGCTCTTAAACCATACTTAGCTGAGAGTCTGGTTGTCTACGCGGACGTTAGAGACTTAAAATGTACCGCATGCAACTTACCAATATCAAACCTAAACGAATTGAAGTCCCATTTGATTAAAATTCACCAATTGAAGTTCCACAAAAATATCACTGACCGAGTAGTGCCATTCAAACATatggaaaattattttgaatgcCAGATATGTTCGTTCAACTTCGAAACTTTTAGATCCATAGAGAAACATATGAACACCCATTATAGGAATTATGTTTGTAATATATGTGGCGGTGGTTTTGTGACCGTCATGCGATTGAAGACTCACATCAACACTCGTCATAGAGAAGGAACGTTTCTCTGCGATTACTGTAATAAAGTGTTCAATACAAGTCTTAAACTCAAAGTTCATGTAGATTTTGTTCATAAGATGTTGAAAAAACTGAAATGTCACAAATGTACTGAACGCTTCTCAGATTATTTTGTACAGAAGAAACATATGGTGGAAGTCCACGGTGAGGAACCGATTGTGTACCGATGTAATGTTTGCAATAAAGGCTTTAGGAGACGATACACATTGTCCTGTCATACGAAGAGGCATTTGGAGCAGAAGGATGTCAGATGTGATATATGTCCTTACAATTGTTATACCAATACAGAGTTGAAAGAGCACAAATTGAAACATGATCGGTTGAATTTTGAACGACCATTCATATGTTCAGTCTGTGATAAGTTGTTTACGAGGCAGAAATCGTTAAAATTACATATGAAGATTCATTCGGATGAGAGGAGATATGTGTGTTATGTTTGTGACGAGGCCTTTGTACAAAGTAATAGTTTGCGAGTCCATATGAAGAATCATGATTTTCCCGCTGATGTGAGACATGGATGCAATATGTGTGATGAATCGTTTGAACAAAGTAATGATCTGAGGGCACACATAAGAAGTCATCACGATGAAAATATaagtgaataa
- Protein Sequence
- MDYIYSKKTQAKRSYDSDDATIYGHCRCCLEEGDHRDITKVYVGSGAKEIYADIFLDCFNVFLSTNTNLSTLICSACVTRLREARDFKALVLRTESHLMDALQNCDKEQMILVNVPVAKDTLDTTIGFKIQVNNIDNTAKINKEATTKVVADSNPKNDAEMDSTKTAKQKNPKRNLDLETKRPLKKALILNTYQLLVRSNATLFKSKMRFGYPCFYCRDIFKDFELLKQHQTEQHVKTDLLKALKPYLAESLVVYADVRDLKCTACNLPISNLNELKSHLIKIHQLKFHKNITDRVVPFKHMENYFECQICSFNFETFRSIEKHMNTHYRNYVCNICGGGFVTVMRLKTHINTRHREGTFLCDYCNKVFNTSLKLKVHVDFVHKMLKKLKCHKCTERFSDYFVQKKHMVEVHGEEPIVYRCNVCNKGFRRRYTLSCHTKRHLEQKDVRCDICPYNCYTNTELKEHKLKHDRLNFERPFICSVCDKLFTRQKSLKLHMKIHSDERRYVCYVCDEAFVQSNSLRVHMKNHDFPADVRHGCNMCDESFEQSNDLRAHIRSHHDENISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -