Acro025129.1
Basic Information
- Insect
- Anania crocealis
- Gene Symbol
- -
- Assembly
- GCA_949315895.1
- Location
- OX438875.1:6833488-6846462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.016 1.8 10.4 1.7 1 23 227 249 227 249 0.96 2 16 3.3 3.6e+02 3.2 0.0 2 23 278 300 277 300 0.92 3 16 0.014 1.5 10.7 0.1 2 23 321 343 320 343 0.94 4 16 0.0011 0.13 14.1 1.4 2 23 349 371 348 371 0.95 5 16 0.0065 0.72 11.7 0.9 1 23 376 399 376 399 0.95 6 16 0.93 1e+02 4.9 0.1 2 23 402 424 401 424 0.93 7 16 0.01 1.1 11.1 1.5 2 21 431 450 430 451 0.93 8 16 0.005 0.56 12.0 0.5 1 23 508 531 508 531 0.93 9 16 0.39 44 6.1 0.1 3 23 560 581 558 581 0.92 10 16 0.017 1.9 10.4 0.6 3 23 605 627 603 627 0.95 11 16 0.00062 0.069 14.9 0.6 3 20 634 651 632 655 0.90 12 16 0.031 3.5 9.5 0.4 1 23 660 683 660 683 0.97 13 16 0.00042 0.046 15.4 0.2 2 23 689 711 689 711 0.94 14 16 4.4e-05 0.0048 18.5 4.9 1 23 715 738 715 738 0.97 15 16 0.00052 0.058 15.1 0.6 2 23 745 766 744 766 0.96 16 16 0.0082 0.91 11.4 2.8 1 23 772 794 772 794 0.97
Sequence Information
- Coding Sequence
- ATGGAATTCGACGAAATCGTGGTAAAGGAGAGCCCGGGTCTCTGCCGGTGCTGTCTCTCCGAGGGATGTTACAAAGACTTGGGGACGGAGTACACTTGGATGAATGAAAACGAAGTTTATGCCGATATGCTTCTCGAATGCTTCGATATTAGTATATCACAACACAATGAAGGCCCGAACGGTCCTAACCGGCTCATTTGCGAGGTGTGTATAACCCGGCTACGTGATGCTTGCAACTTTAAAAAGCAAGTCCTGGATTCTGAGAAGAAATTTGTTGATATGGTCGGCAGAGGAGAGTTCAGACCAAAAGTACTAATCTACCAGTCCCAAATGAAGGCGGAAGCGCACGAGGAGACTGCCGGGGACGATATAGAAGTGGAATATCTAGACGATGTTGATTTCGGAGACGATGACGAGCCTCTGAAAAACGAACCATCAGCGTCTGAAATCGCGGTCGAAGCACTCCCCGTGCCCAAGAGGGGTCGTCCTCGGAAAGGCCTTAAAGCGGAGAAGAAAAGGCCTAAGGCTGAGGAGAGGGCTAAGACGTCCAAAGCCCTGGTTAAAGatgtaAAACCGCGGAAATACAAGGGCTGCGAATCTTCGTCTATGCGCAGGCGCAGAAATCTTCAAATTCTATTCAACAACACGTCTGTTATACCGTTCAAATGGCGCGGAAAGTATCTGTGTTTTTACTGCAGTAAAGACATCTCCGAATACTCGGAGTTGAGGAAACATACTAAATCTCATGGGGACTGTTCAACTCGTGACCATTCACTGAAAGTTTTAAAAGGCGGACAGAATATGGAAATCAAAATTGACGTATCCGATATAACCTGTGATATATGCATCGAACCATTCCCGTCTCTTGACGAAATACTAAATCATTTATTCGTTAAACATAAGTTGGAGTACGATAGAGACGTAGATATGTCTATAGAAGAGTACAGACTAGTGGATCTCACCTGCCTAGTCTGTGGCGAAAAGTTTGCGTACTTCGGTTACCTTGTATCTCACGTCAATAACACACATCCGAAGAAGTGTCTCATTTGCGATAAATGCGAACAAAAGTTCAACAAACAGCGTGATCTTTTCTCCCATATAAAAAATTATCACAGAGAAGGCGGGTATCAGTGTGAAGTGTGCCCGCAAAATTTTAGTTCCCTAAACATTTTGcggaaacacaaaaacaatagaCATTTGACTAGGTGTAATATATGCCAGTTGAAATTGCCCTCGGCGGTGTTGAAACAAAAGCACATCGAACTTGAACACCCAGATGACGGTTCGCTGCAATGCGACAACTGTTCCAAAGAGTTCCATACGAAACAAGGCCTCAAAATGCATGAAAGAAAATGCAAAGGCGATGATATCTTCGACATCgaaataaagaaagaagaagCGATGGATTACGATGAAAGTTGCGAAGAAGTAAAAAGGCCTAGTGTCAAACAAATAAGGGAAAATATAGTGATAGTAATCAACATGTCTACTGCAATACCTTTCAAtttctacaaaaataaattcaactgTTTCTATTGTTCCAAAGACTTTGCGGATTCCGATTTAATGAGAGAACACACTGTTATGGATCACCCAGTTTGCGATGTCAAGCAAAAGTGTATCAGGAAGTGCAGAGAATCGGTAGCTTGCGTTAAAATTGACATTTCATCTCTAGCTTGTAAGATATGTTTTGAATCAATGACCGATCTAGACAGTTTGTTAGAtcacttaattttaaaacacgAGGCTAATTATGATAAATCCATAACAACATGCTTGCAACCGTACAGGCTGATCAAAGATCATATAGCTTGTCCGCACTGCCCGGGGGAAGTTTTCAGATTCTTTGGCACCTTGTTGAAGCATATGAATAAGAAACACactaataacaatattatctgTGTATACTGCGGTCAGACTTTTAGACGCGATCAGAACTTGAGAGTTCACATATGGCGTCACCATAGAGATGGTCGATTCAAATGCAGCATATGCGACGCGGAGTGTAATATACCGTCTAGGTTGTACATGCACATGGCAAAAGCTCACGGTGTGAAAGCAGCGAAATGTCCGAAGTGCCCCGAGAGTTTTGCAACGCAGTATCTCAGGCAGAAACATCTAATTGAAGCGCACAATTCAGGACACAAGTGCACTTACTGCGGGAAGTTATTTACGAGAAATTCTTTCATGCGGGACCACATTAGGAGAACGCATCTAAAAGAGAAAAACGTTGAATGCTCAATATGCAGCATGAAGTTCTTCAACAACATTCTTCTAAGGCGGCACATGGTTAAACATAGCGGAGAGAAGAATTTCCACTGTGATATGTGTGGGGAAAGATTTTTCTGGCGCAAAAGTCTAAGGACTCATATGGCTAGGCACAATAGGCAGATACAGCTTTGA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNENEVYADMLLECFDISISQHNEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFVDMVGRGEFRPKVLIYQSQMKAEAHEETAGDDIEVEYLDDVDFGDDDEPLKNEPSASEIAVEALPVPKRGRPRKGLKAEKKRPKAEERAKTSKALVKDVKPRKYKGCESSSMRRRRNLQILFNNTSVIPFKWRGKYLCFYCSKDISEYSELRKHTKSHGDCSTRDHSLKVLKGGQNMEIKIDVSDITCDICIEPFPSLDEILNHLFVKHKLEYDRDVDMSIEEYRLVDLTCLVCGEKFAYFGYLVSHVNNTHPKKCLICDKCEQKFNKQRDLFSHIKNYHREGGYQCEVCPQNFSSLNILRKHKNNRHLTRCNICQLKLPSAVLKQKHIELEHPDDGSLQCDNCSKEFHTKQGLKMHERKCKGDDIFDIEIKKEEAMDYDESCEEVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDLMREHTVMDHPVCDVKQKCIRKCRESVACVKIDISSLACKICFESMTDLDSLLDHLILKHEANYDKSITTCLQPYRLIKDHIACPHCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCSICDAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHNSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDMCGERFFWRKSLRTHMARHNRQIQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013343;
- 90% Identity
- -
- 80% Identity
- -