Apse007146.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- lola
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010001056.1:20585-28540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.038 5.5 8.5 0.8 1 19 100 118 100 121 0.94 2 11 2.6 3.8e+02 2.8 0.4 1 12 130 141 130 143 0.81 3 11 0.0023 0.33 12.4 2.1 1 21 238 258 238 259 0.97 4 11 0.086 12 7.4 6.3 1 21 267 287 267 290 0.94 5 11 0.19 27 6.3 6.2 1 20 297 316 297 318 0.91 6 11 1.6e-05 0.0022 19.2 1.8 2 23 325 347 324 347 0.96 7 11 0.034 4.9 8.7 5.6 1 20 356 375 356 377 0.94 8 11 7.3 1e+03 1.4 0.1 5 12 377 384 375 384 0.88 9 11 0.059 8.5 7.9 1.3 3 23 386 407 385 407 0.95 10 11 0.009 1.3 10.5 1.8 1 21 819 839 819 840 0.95 11 11 0.0012 0.17 13.3 3.5 1 23 848 871 848 871 0.98
Sequence Information
- Coding Sequence
- ATGATCTCACTCCTACGACGTAATTTTAAACAGTTCAGCAAAAAGCCACGACCTCTAACGCGAAGTCGAAGCGATCAGCACCAACGTCAACAGATCCAGTTGGAGGGCCGAGATGAGCTGGAGATTGAGCGCGTTGACGAGGACGAAGCTTCTTCgtcgcgagacagtctcgtgTTTCCCGCTTCACTTGGCCTCGTCTCGCGCCAATACCTTGAACAGCAACAACAGCGCCAACAGCAGCAAAGagagcaacaacagcagcaacagctaAAACAAGAGCCGAGTCAAGCAAGAGAGTTCCGCTGCCGATTCTGCGGTAAAGGGTATAGGTGGAAAAGCACTATGAGGAGGCACGAGAGCCTCGAGTGCGGTGATAAGCCTCCGTCATTCCAGTGTCCCCAATGTCCTTATAAAGCTAGGCAAAGAGatCCAGGGAAATCTTCGGAAGGACAAACTGGCGAAGCATATGAGGATGACCCAATAATTCTAACTGACACTTTTCCAAATTCAATGGGTGAAACTTCAACGGTGGCTGAAATCCATTACATTAAATTAGAGCCTGAGCTTTTCACATCTGGATCTGAAGAGGAACCAACCGAGGACTCGTTGGCCATCTTGGAGTTGAGCTACTGTAAAGCATGCGATACGCGCGAACCCATACGTAACACCCGGCTGGATGCCAGATGCGAGCATTGCCAAAATTTTCTGGAATACCAATGTGGCAATTGTCGAAAGATATACAAGCGCGTGAAGTCATTACGGTACCACATTCGGCACGACTGTAACAAGGAGCCGACATTCCATTGCGAGCACTGCGAATACAAGACGACGCGCAAGGCTAGCCTACAGGTGCACGTCAAGTGCAAGCACAGCGACTTGAAATCGTTGCACAAGTGCAGCAAGTGCGGCCGGCGCTACAAGCATCGCTTTCACATGCTCGGCCACGAGAAGCACTGCGGCCGAGCCCGAATCAAGTGCGAGCTCTGCGACCACACGACCAATCGGCCATCGAATCTCAAGCTGCATATGCGCAATATGCATCAGGATCCCAACACCATTGAACTATACGAGTGCTTCAAGTGCAACCGCACCTACAAGCATTCCAGAAGCTTTTACAAGCACAAATTGAACTGCGGCAAAGTTTTTAGGCGCGACTGCGCCCATTGCGATTATTACACCAGTACCAAGTTCAAACTGCTGATCCACATCCTTCAGAATCATAAAGAGGAGGTCTTCCCTCACGGAAGACCGAGCATGAGACAAAGAGCGCGAAAAAGCAATCCCAAGGGAGACGCTTCTATCGCATACACCGAAGTTGTGAATTCGGAAATAATTACAGACGATACCAATGTGCCGAATGCCGAAATCGTCAGGTCACAAGAAATACTTATGGTCAGTTTACCCGAAGAAAATCTCGATGATTTTAGCCAGACTACGTTCAATCAGGATTGGCCTTTGATGGATGTCAGAGGTTGGGTAGAAACGTATGATAAAAAGCATACAATTCGTATGTCGTCGTTGACCAAAGTCTTAGATTCCGGCGTTGTCGAGCCAGGAGATCGGCGGGAATTAGTTCGAATCGCTGTTTCAGGAATGGTTGAATTTAATGACGGAAACctATATCCTTCTTGTCAGTTAAAAACACAATTAGCCAAAGACATCATTTCAGCATTTCCAAAGTTATGTTCTACAAGTGGTGGTTATGAACATTTTTACGATCCCAAAACTAATCGTGGATTTATAGAGTTCAGATTGAAAACTCTTCGACTTAAACTTAATCCTTCTGAAAAGAAAAGGGCTACAAGTACTCAACCAAGAGAAAGGAAGGTTACTAAAGCACCAAACAAAATCATTATTAGCGAAAACTTATTAGAGGATTCAGAATTCAATTCtaaaatTTCAGAATTGTACATGAAAATTCCCACGGAAGAAACCAAAAACGATATTTTCAGACTAACTGAGGAAACAAGAGCTAAtcgaagaaaacaaataaaaacagctCCGGAAACTATGACCTTAGGCGCTATATTAGACGTATATCCAAGATTTAAGGATTTTCATGGTGATTTGataagaCAAGAGTTTTTACTCGAGTATCCACATAATGATACGTTCAAACATAAATTTACATCTTATTATGCACCGAGAATTCTGCAATATTGTTCTTCCACAAAACCTCATCTATTGCAATCGATTCAAGATGTACTTGATAATTCTTTAAAagcattaatattattaccAGAATTGTTGCCAAGTCCgaattatataaaaagaaaagaaaacaggaCGGGAGAACCGAAATCTTTATTCAAACCGAAATTCGTGAAAACCATACCAAACGAAAATTTACTTCATTTCGTTAATGTAAAAACGTCATACGGCCTGCAAGCCTGGCCCCAACAGCCGAGTCAGCTACAATTGGCCGCCGAATCGTTGATCAGCGTCCCCATGAAATTCCCCTGTCCcagctgcgccagcgtcttcAGCCGCAAGTGCAATCTGACCTATCACCAGAAGTACGAGTGCGGTCAGCTGCCGCGCTTTCAGTGTCCCTACTGCTATCATCGCGCCCGCCACCAGTCCAACGTACGGGCCCACGTGCGCAGGATACACGCCGGTAAGGAGGTCTACTTCATCGACGTTGGCCAGCCCAGCAATCATCTCGCCTATCTTCCCCACGACATTTGA
- Protein Sequence
- MISLLRRNFKQFSKKPRPLTRSRSDQHQRQQIQLEGRDELEIERVDEDEASSSRDSLVFPASLGLVSRQYLEQQQQRQQQQREQQQQQQLKQEPSQAREFRCRFCGKGYRWKSTMRRHESLECGDKPPSFQCPQCPYKARQRDPGKSSEGQTGEAYEDDPIILTDTFPNSMGETSTVAEIHYIKLEPELFTSGSEEEPTEDSLAILELSYCKACDTREPIRNTRLDARCEHCQNFLEYQCGNCRKIYKRVKSLRYHIRHDCNKEPTFHCEHCEYKTTRKASLQVHVKCKHSDLKSLHKCSKCGRRYKHRFHMLGHEKHCGRARIKCELCDHTTNRPSNLKLHMRNMHQDPNTIELYECFKCNRTYKHSRSFYKHKLNCGKVFRRDCAHCDYYTSTKFKLLIHILQNHKEEVFPHGRPSMRQRARKSNPKGDASIAYTEVVNSEIITDDTNVPNAEIVRSQEILMVSLPEENLDDFSQTTFNQDWPLMDVRGWVETYDKKHTIRMSSLTKVLDSGVVEPGDRRELVRIAVSGMVEFNDGNLYPSCQLKTQLAKDIISAFPKLCSTSGGYEHFYDPKTNRGFIEFRLKTLRLKLNPSEKKRATSTQPRERKVTKAPNKIIISENLLEDSEFNSKISELYMKIPTEETKNDIFRLTEETRANRRKQIKTAPETMTLGAILDVYPRFKDFHGDLIRQEFLLEYPHNDTFKHKFTSYYAPRILQYCSSTKPHLLQSIQDVLDNSLKALILLPELLPSPNYIKRKENRTGEPKSLFKPKFVKTIPNENLLHFVNVKTSYGLQAWPQQPSQLQLAAESLISVPMKFPCPSCASVFSRKCNLTYHQKYECGQLPRFQCPYCYHRARHQSNVRAHVRRIHAGKEVYFIDVGQPSNHLAYLPHDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -