Apse006999.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010001021.1:44210-46374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.042 6.1 8.4 3.6 1 22 166 187 166 190 0.91 2 10 0.012 1.8 10.1 1.3 1 22 237 258 237 258 0.93 3 10 0.00063 0.091 14.1 0.5 1 23 267 290 267 290 0.95 4 10 0.0084 1.2 10.6 0.4 3 19 300 316 298 317 0.94 5 10 0.3 43 5.7 5.1 1 23 325 348 325 348 0.95 6 10 0.49 71 5.0 0.6 2 10 398 406 397 409 0.88 7 10 0.00016 0.023 16.0 1.7 1 23 424 447 424 447 0.98 8 10 0.0013 0.18 13.2 0.2 1 21 452 472 452 473 0.95 9 10 0.00049 0.071 14.5 1.7 1 23 480 503 480 503 0.97 10 10 0.0067 0.96 10.9 0.5 1 21 510 530 510 531 0.96
Sequence Information
- Coding Sequence
- AtggataataaagaaaatcaaaatcaacTGCTTATAGAAGCAGAAATAGATGTGCAAGAGGAAAAACCTGATCAGTTGGTAGCAAATACCAATTTTGATGCATCTGACAGTTCTGATATTGAAATAATAGCAGTCAGTGAAAATATAGCACTGGGTAAaagaaataagtttttaagtCCAATGTACAATCGGAGGAAAACAAAAGTTTCCATAAATTCAGttaATAGTATGAAACAGCAATCCTATATCAAagaagaaattattatttctgatGAATCTGAATGTTCTGatATTGAAGGTGATAAATTCAAGCCGTCCCATTCAAATGGTATTAGAAATGAAAAACTTCAAATTATATTgcagaagaaaaaacgtaTTAATTCAAACAaaTCATTAAGTGCAATCATTTTGAACTGCCCAAGATgtaataaaacagaaaaagttTTTAGTATTACTCTAATGAGTACCTGCAAAGATTGTAACGTTAATATGTCTTATGTTTGCAATAAATGCAACAATCGATATGAATCAATGTCAGCACTTTATAGACATAAAAAACTCCAGTGTCATACTATTAAAGCAAAGcgtaaaaatactaaaaaattggatttatCAGAAATGTTCCTGACAAGATGCAATAAGTGTGCTGTAGTGCGTAAACtcaagaaaaaacaaacgaaatgcTCAAGCTGTAAGGCAACCATGATCTATGAATGTTCAGTCTGTAGCAAAAGCTATTGCTCATACTCGGGTATCTATTTACACGTCCGACGTTTCTGTCAGCCAAAAGTACAAGCCTACTACTGCAACGACTGCAGCTTCAGTGCAAATAATGCGGATACTCTGCAACGTCATCTTGTGCGCAATCATCCCGACTTGTACCGCGACGTTATAAATTGCTCCAAATGCCGCAAGTCGTTCGAACACCCTATTTACCTTGAACTCCACGAGCCCCTTTGCGGTCTTCCACATTTTACTTGCAAGTTTTGCACCTACAAGCCGAAGTCATGCTCGAGTCTCCAGAAGCATCTGCTTTTGCGTCACGCGGAGCAGGTAAAAATTGAGGGTCTGGAAAACATTTTGGAGCAAGTTACCTCACTAAAAGTTGAGAACATTGATAAAGCAGTCGTAGTAACGAACAGCAAGCAGGGAGATGTGAGCCAATTTGATTTGTTTCACCTACGACGTCTACACTGCCCAAAGTGCGAAAAGTCTTTCGACTTTGTGCCCAACAGTTCGCCGTGCGAAATCTGTCAAGGAGCCGTAGTTTACGAGTGCGGGGGTTGCTCGAGGACGTACGAAACTGTCAACTCGTTACACCGTCATCTACGCCGTAGTCATGCTAAAATCAGGTACAGctgcaaaatttgtaatagagGCTTTACTAGCTTCGGTGACGCAAACGAACATCGTAGGATCTGCAGCCAAGAGCAGCCATACGAGTGTAAGCTCTGCCCATTCAAGACGCGTTATAAATCCAGCCTTTCAGCTCATACTAATAAGCTGCACAATAGTCACCGGCGTGCCTTCGAATGTGGATCTTGTCACATTATATACAAGACCAGTCGGGCTATGAAGCGACATGTGCGTCTCTGCACAGCCTATTTACAAAATTAG
- Protein Sequence
- MDNKENQNQLLIEAEIDVQEEKPDQLVANTNFDASDSSDIEIIAVSENIALGKRNKFLSPMYNRRKTKVSINSVNSMKQQSYIKEEIIISDESECSDIEGDKFKPSHSNGIRNEKLQIILQKKKRINSNKSLSAIILNCPRCNKTEKVFSITLMSTCKDCNVNMSYVCNKCNNRYESMSALYRHKKLQCHTIKAKRKNTKKLDLSEMFLTRCNKCAVVRKLKKKQTKCSSCKATMIYECSVCSKSYCSYSGIYLHVRRFCQPKVQAYYCNDCSFSANNADTLQRHLVRNHPDLYRDVINCSKCRKSFEHPIYLELHEPLCGLPHFTCKFCTYKPKSCSSLQKHLLLRHAEQVKIEGLENILEQVTSLKVENIDKAVVVTNSKQGDVSQFDLFHLRRLHCPKCEKSFDFVPNSSPCEICQGAVVYECGGCSRTYETVNSLHRHLRRSHAKIRYSCKICNRGFTSFGDANEHRRICSQEQPYECKLCPFKTRYKSSLSAHTNKLHNSHRRAFECGSCHIIYKTSRAMKRHVRLCTAYLQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -