Apse007071.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010001039.1:81049-84645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 1.6 10.2 0.8 1 20 111 130 111 131 0.96 2 13 0.039 5.6 8.5 3.2 2 23 281 303 281 303 0.94 3 13 5.8e-06 0.00084 20.5 0.8 2 23 359 381 358 381 0.95 4 13 6.1 8.7e+02 1.6 6.5 3 23 469 490 468 490 0.89 5 13 0.0023 0.33 12.4 0.4 3 23 540 561 538 561 0.96 6 13 0.00021 0.03 15.6 0.1 3 23 610 631 609 631 0.96 7 13 3.6e-05 0.0052 18.1 0.4 3 23 662 683 660 683 0.92 8 13 0.0087 1.3 10.6 3.7 2 23 725 747 724 747 0.96 9 13 0.022 3.2 9.3 2.8 2 23 761 783 760 783 0.94 10 13 9e-05 0.013 16.8 0.3 3 23 831 852 830 852 0.91 11 13 4.7 6.8e+02 2.0 0.9 1 23 934 958 934 958 0.96 12 13 2.4e-05 0.0035 18.6 0.1 2 23 974 996 973 996 0.96 13 13 0.034 4.9 8.7 0.5 1 23 1071 1094 1071 1094 0.97
Sequence Information
- Coding Sequence
- ATGTCGTCGAGTCAAGAGGCGACGGAAATCGATAGCGAGGGCTCGAGCTGCGAGGAGCGCGAGTCCCGCAGGCAGGCGCTCGGCGATGGGGAAAGCGCGCCGAAGAAGCGCCGAAAACAATCGACCCCCGTGAAATTCTCAACCTCGCTGTCGGTCGGCGAGCCCGATGAGTCCGAGGAGGAGACGACGCCGCCCCGAGCCCAGCCGGCCGAGGCTCAGAGCCCGAGCAGCCACGAGTACGATCGGGAAGGTAAGCTGACCTCGTCACCGCCGCACTCTAAATCCATACCGGGCCATCCGTCGGTCAAAGACGAGAATTTGAACAATGAATTCCGCTGCCAGTACTGTAGTCACTTTTTCGATAATCGCGTCGCCCTCGAGCTCCATCTCGAGTGCGAGCACAACCTCGTCCTCTCGGTCAATAGCTCGGCGCTACAGCAGCATCATCAGCAGCATCAACTCAATCGCCAGCAACAGCAAACGCCCCCGAGCAATCGGGATTCGCCGCCCGTGCAAGCTAGAATAAGTCCAGAGTCGAGCAGCCAGCTCCAGAGCTCCGAGCAATCCATCAGTCCGATGAACCTCTCGGGCATTAGCATTAGGAACTTTGCGTCGAGCGCGGCGTGGCTGTCGGGCCAGGGACAATTGCCGAGCTCCGAGGCAGCCTCCCTGTCGAAGCTCCAGCCCGCGAGAAACGGCAATCACTTTCCGCCCATGCCCCCGGGCTTTCCCGGTCCTCTCGCTCAATTCTTACCGATACCCGGATTCCCCCTGCCCGACTCCACCCAGCTGAAACGGCCCGCCATCGGGCAGTTTCCCAAAATCTTCAATCGCGAAGCATACTGTGATCTGTGTAATCGAGAACTTTGTAACAAGTACTTTCTCAAAACGCACATGGCCAACAAGCATGGCATTTATATCGATCCGCCGCCGAGCCAAAGCAACGACAGCAACTCCAGACCATTTTCTACGACGCCAAGCCCCCTGGGTAGTGTGCAAGGCTGCTCGAGTGCCAAGCTACCCGATCAAACCCAGAGACTCGAGAGCAACGacatgcagcagcagccaaccTTACCTTGTGATATGTGCCCAAAGCGATTTAAAAACGAAGACTCCTTGAGAAAGCACAGAAACAAAATTCACCTGAATCCCAATAGCGAAGCAGCCGATTCGACTCAAATTCAAATGAACTTTCCATCGTCGGTTAGCGAGGACAGTAGACAGAGCCCCGTTGGCATGGAGACCCTGTTTAAGCAGGAATTCAACGTGGAACAGGAAGACATAGCTTACGCGCCAACTCCTCGGTCTATAACATTGTCGCCTCAGTCGGTGCAGCAGCTTAAGGAATCGTCTTTCAACGGGGATCACCTGCGACGCCTAGGCGTCATGAATCCCGAGGCTTTTTGCGAGATATGCTGCAAAGAGTACTGCAACAAATATTTCCTTCGAATACACAAGCTCAAGAGACACGGCATATTTAGTCCGGACAATGAAAAGTCACCCAACACGCCTGGCTCTGCGCCATGGCATCAGATTCAAACCAGCCCGTTGAACCTCATCATGGGCGATAGCCTTGGCACTGGATCGGAATCCGGCGATAGAATCGAGGAGTACGGATGCAAATCATGCGGCATTCGCTTTCAAACGCAAGACCTTTATCAGCTGCACATGGAGAAGATCCACGAGAACGGGGAGCGTCAGTCACCAAGACCGGATCAAGAGGCAGACTCGTTGGACCAACGGCCAGATTCCATCTCTGAAGATCTGCAAAAGTTGCAAACAATGATATTGCAGCTGAACGGCCTGGAATCGAACAAGGCAGCCTCCTGTGCTCTCTGCGGCAAAGATTACGACAGCCCGACGGCTTTGAGAAACCATATGATAACCGAGCATAATATCTTATCGGAGAACTTGtcgatgcagcagcagcaacaagtGCTGCAAGAAAAATCACCTCCCACTGCCGTATCTAATCAAGTATGCTGCCCCAGTTGCGACAAGGAATTTCCCGATCAAGACTCCTTGAAGAAACATATCGCGGAAGATCATCAACCATCGACTCCAACAAGCTCGACACCTCAGCTCTCATCATCCGTTCCTTCGACGCCAAAGTCCAACTCGTCCCAGCAGGGCGAACGAAAAGCCACGGCATCGCTCACGCCCACCTCGAGCTACTGCGAGATCTGCAACAAAGAACTGTGCAACAAGTATTTCATGAAGACCCACATGCAAAAGATGCACGGCATCGAAATAGAAAACGGCGCGCAGATTGGCGGCGTCGTCTGCAACATCTGCAAAAAGGAGCTCTGCAGCAAGTACTTCCTTAGAGTCCACAAGCAAAATACTCACGGCATCATCGAGGAAGGCACGACGACCACGAGCGTCCAGAAGCAGGACAATTTCGAAAGTTCGTCGAGCAGCGAGAACGTTGCTCTGAGACCGGACCAGTTCAACGAGTCGCATCGGTACATCACTCATTACACCGAGGCCTGTCCGATTTGCAATCGTCGATTCAAGAGTCCCAAGTGGCTGAAGCAACACGTGTACGAGATGCACGGCCAGGCTGGGGTTGAGAAGTGGAGGGAAATGGAGCAAATCCAGCAGTCCATACCCAGACCAACAGCTCGAGTGCCGAACGTCTCGAAGAATAGCCAGCAGCCTACGCACGGCGGCGCTAGCCTGAAAATACCAAATGGCTTCGAGGCCAATCAGCAAATTAGAGCGGACCTGGCTGTTCTGGGAAATCAAGttctttcgaattttttcgGCGGCTCGTCGGACGATCAGCCGGGCCAATTGTATCGCTGCTCCCAGCTCAACTGTAACTTCTCGACCTCGATTTTGCCCCTCTTCTTTCTGCACGAGAGATCGCACAATCACCAGGACAACGTGGCCGTGGAAAGCGATCAGCAGCTGCTTCAGTGCCCAATTTGCGCGCAGGCCTTTTCACAGCCGGAATTGCTTAGGCAGCACATGATATCCCGTCATCCGAATCCATTTCCAGGCCTCCTATCCCAATTTCCCATACCTCTGCTCAACGAATTTGCAATAAGTGCcgagcatcagcagcagcagcaggataAGAACGATTACCCGGACATAAAGGAGGACATCCGTCAGGCGAGTCCGCAGATAATGAACGAAATCGACACGAACAAGATGAAGCGGCAGGAGGAGAACAACGCCGTGCAGGTGATGCCCCAGGGGACGTACAAGTGCGCCCAGTGCGGCTACGCCACTGCCAATCTCAATCGCATAAAGAAGCACGTGAAGAAGGACCACAAGAGCCTGGGCGACCCGACCGAGACCGCCCTTGCCGAGCTGACGAGGACGTTAAAGGACGTGGCGAACAAGCACAAGGTGCCGGCGAGCTACGCGGTGCCGCAGGACCCGAGCCTCGTCCCCGACAAGACCATCATGCAGCCGTTCATAATCGAGGAGCTGGCCAACAGCTCGCCGGCGGCCCACAACGGCGAGGGCAACTGCAACAGCGACGAGCCGGCGGCCAAGCGATTCGCCCCGGCCCTCGTCTTCCTACCCGTGAAGACGAGGGTCAGCGGCGCCCTGACGATGTCGTTCACCCTGAATCCGGCCTGA
- Protein Sequence
- MSSSQEATEIDSEGSSCEERESRRQALGDGESAPKKRRKQSTPVKFSTSLSVGEPDESEEETTPPRAQPAEAQSPSSHEYDREGKLTSSPPHSKSIPGHPSVKDENLNNEFRCQYCSHFFDNRVALELHLECEHNLVLSVNSSALQQHHQQHQLNRQQQQTPPSNRDSPPVQARISPESSSQLQSSEQSISPMNLSGISIRNFASSAAWLSGQGQLPSSEAASLSKLQPARNGNHFPPMPPGFPGPLAQFLPIPGFPLPDSTQLKRPAIGQFPKIFNREAYCDLCNRELCNKYFLKTHMANKHGIYIDPPPSQSNDSNSRPFSTTPSPLGSVQGCSSAKLPDQTQRLESNDMQQQPTLPCDMCPKRFKNEDSLRKHRNKIHLNPNSEAADSTQIQMNFPSSVSEDSRQSPVGMETLFKQEFNVEQEDIAYAPTPRSITLSPQSVQQLKESSFNGDHLRRLGVMNPEAFCEICCKEYCNKYFLRIHKLKRHGIFSPDNEKSPNTPGSAPWHQIQTSPLNLIMGDSLGTGSESGDRIEEYGCKSCGIRFQTQDLYQLHMEKIHENGERQSPRPDQEADSLDQRPDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDSPTALRNHMITEHNILSENLSMQQQQQVLQEKSPPTAVSNQVCCPSCDKEFPDQDSLKKHIAEDHQPSTPTSSTPQLSSSVPSTPKSNSSQQGERKATASLTPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVVCNICKKELCSKYFLRVHKQNTHGIIEEGTTTTSVQKQDNFESSSSSENVALRPDQFNESHRYITHYTEACPICNRRFKSPKWLKQHVYEMHGQAGVEKWREMEQIQQSIPRPTARVPNVSKNSQQPTHGGASLKIPNGFEANQQIRADLAVLGNQVLSNFFGGSSDDQPGQLYRCSQLNCNFSTSILPLFFLHERSHNHQDNVAVESDQQLLQCPICAQAFSQPELLRQHMISRHPNPFPGLLSQFPIPLLNEFAISAEHQQQQQDKNDYPDIKEDIRQASPQIMNEIDTNKMKRQEENNAVQVMPQGTYKCAQCGYATANLNRIKKHVKKDHKSLGDPTETALAELTRTLKDVANKHKVPASYAVPQDPSLVPDKTIMQPFIIEELANSSPAAHNGEGNCNSDEPAAKRFAPALVFLPVKTRVSGALTMSFTLNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878364;
- 90% Identity
- -
- 80% Identity
- -