Apse002355.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010000210.1:76399-79377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.3 4.8e+02 2.4 0.7 1 23 58 81 58 81 0.91 2 15 0.34 50 5.5 0.2 1 23 141 164 141 164 0.94 3 15 0.22 32 6.1 6.1 2 23 212 234 212 234 0.97 4 15 0.52 74 5.0 5.9 1 23 251 274 251 274 0.97 5 15 0.5 73 5.0 0.5 1 23 329 352 329 352 0.95 6 15 0.47 68 5.1 1.2 1 23 413 435 413 435 0.97 7 15 0.0078 1.1 10.7 0.2 1 23 445 468 445 468 0.96 8 15 0.006 0.87 11.1 0.7 1 23 518 541 518 541 0.97 9 15 0.0031 0.45 11.9 2.9 1 23 560 583 560 583 0.96 10 15 4.6e-06 0.00066 20.9 1.3 1 23 589 612 589 612 0.95 11 15 0.00036 0.052 14.9 1.2 3 23 619 640 617 640 0.93 12 15 0.003 0.44 12.0 0.4 1 23 645 668 645 668 0.96 13 15 3.1e-06 0.00045 21.4 0.4 2 23 675 696 674 696 0.97 14 15 3e-07 4.3e-05 24.6 0.3 1 23 702 724 702 724 0.98 15 15 1.5e-06 0.00021 22.4 0.9 1 23 730 752 730 752 0.98
Sequence Information
- Coding Sequence
- ATGAACGTTTTATCTGTCGGAACCGACGCGACGCCGAGCAACAGCCGCAAGAAGTTCGTCTTTCGCAAGAGGCTCGTGAAGATCACTCCGCTACAGCAGATGAAAGCCGCGAAGGCAGCAGCTCGTCGAGCGGCCGCGCAGAAGACCAAAGCAGCCGAGGGCTTGGTTCTCTACGTCTGCAAGCCGTGCAAGGTCTTCTTTCCGCACGAAAAATTTCTCGCTCTCCACAACAGCGTCGTCCACGGCCAGTCTGTCACCATAATTCGGGAACGCGTTGCGCCCAACGCCCCTAAGATCCCGGTGCAAGAGTCTAACAAAACTCAGTCGAAGCGATATCTCACTATCCAAGGAACGATCAGCGAACAGTCTGGCTTGGTCGACGACAAGAGCAAGGGCTACCATCTGATCAACACTGGCCAATACGTCTGCGACAGCTGCAACTTCCGCTCTGCTCAGCGCTCCTCCATCGTCGATCACGTTAATCAGCTTCACGACAATCAGCTCGTGGTCCAAAACGAAGTCGTGGACGAGGATGACGAGGACTCCTGGCCGATGGAGACCATCGAGAATTCGTTACCAGAGCCTCGACAAGTCGATCGAATAAAGGTTGTACCGTCGGAACGAATACTACGCAAGTGTCCGCACTGTCCGTTCAAGTCCGAGAACCGGTCGACCTTCCATTCGCACGTGAAGCGCAAACACGGTGCTGGTGCAGTTGATGCGCAGGAGACGGTAGAGAAGGTGCAAGTCCATCAATGCGCTCACTGTACGTTTCACGCCGAAAAGTCGTCGAGTCTGCAGTGGCACGTAAAGCGCAAGCACAGGAAAGAGTGGCTCGAGGCTGTGGCGCGAAAAGTGGCGCTTAAAAGCGAGACCGGTCAAATGGACGTGGAATTGGCAGAGCAAAAGGACGAGCAGGAACTACAGTTGTCCGACTACGAAGATGAGGACGAGATAGAAGAGGATTCAACGAAAGCCGATGCGCACAAGTGTTCGGCGTGCGACTTCCGGGGCGCCTCAGCCTCGAGTGTAAGGGCTCACAAGGCACGAATGCACCGTGGCCACCAAGCAAGCTCCGAGCGGGCAAACTCGAGGCGAACAATGATAAGGCAGTGCACTGGCTACGCTTGCCACTGCTGCACCTTCGTCGCGGCAACGGTAGCGAGCATAAACTCCCACAACGCTCGGGAGCACTCGAGCGTGAGGCCGGCGATAACAGAGGTCCCGGTTAGCGAGTACGACTGCGACCAGTGCGAGTTCAAGTCGCAAGAGCGCAGGAGCATGCAGAACCACTTGAAGGTCCACGCGCTCACGGCCAACGAGGAGGGCATGTACGCCTGCAACGTGTGCGTGTACGAGACCAACTCGAAGATGGGCTTGCAGAGGCACATATCTATCAAGCACTACAAGCCGAGGCGCGAGGCGGCCAAGCTCGATCCCGATGCCTGCCTCAGCTGCGACGAGTGCGGTTTCAAGTGCCTCAACGCCAAGATCATGGACTGGCATCGCCGTCAGCACGAGGCGTCGGACAACGCCGAGGAGGGCAATAGCTACTTCTGCGACGACTGCGACTTCTCCACCTGGACCAAGGGACAGCTCGCGTCGCATATTAAGCGCAAACACAAGGACGAAGACCGGCAGAGCGAGGAGGCCACCGGCGAAGTTACGCTCGACGCCTACCCCTGCGACCAGTGCGATCACATCAGCAAGAATAAGCACTCCCTCAAGGTCCACGTGATCCGCAAGCACACCAGCGAGTTCAATCACGAGTGCGAGATATGCGGCAAGAAGTACAAGGTCAAGGCCGATCTGACTAATCACATACGCTTCCAGCACCGCGAGCAGCCCATAATCTGCGACGTCTGCGGCAAGACCTGTCGCAACAGCAATTTGCTCTATCTCCACCAAAAGTTCGCGCATTACAAGCCGGACTTCGAATGCCCCATCTGCCACAGGCGCATGGTCAGCCAGGCGAATCTCGACGAGCACGTGCTCAAGCAGCACGAGCAGCGCGAGGATGTCGTCTGCGACGAGTGCGGCAAGACATTCACCAAGCAGGCCAGACTCAAGATCCACAAGAGGGTGCACACCGGGGTTAAGCCGTACACGTGCAAGATTTGCGGCAAGGCGTTCGCGCGCAGGAACGGACTCAGGCAACATTTGCTCATACATACCGGTCAGCGGCCTTACGAGTGCGACATCTGCAAGAAAGCGTTCACGCAAAAAACCGGGCTCATCAGCCATAGGAAGAGCCATCCGGGAAATCATCCTCCTTTGCCTAGGGTTACTATTGAGCACGTACTGTCGGATCTGCTCAACGAAGAAGAAAGCTAG
- Protein Sequence
- MNVLSVGTDATPSNSRKKFVFRKRLVKITPLQQMKAAKAAARRAAAQKTKAAEGLVLYVCKPCKVFFPHEKFLALHNSVVHGQSVTIIRERVAPNAPKIPVQESNKTQSKRYLTIQGTISEQSGLVDDKSKGYHLINTGQYVCDSCNFRSAQRSSIVDHVNQLHDNQLVVQNEVVDEDDEDSWPMETIENSLPEPRQVDRIKVVPSERILRKCPHCPFKSENRSTFHSHVKRKHGAGAVDAQETVEKVQVHQCAHCTFHAEKSSSLQWHVKRKHRKEWLEAVARKVALKSETGQMDVELAEQKDEQELQLSDYEDEDEIEEDSTKADAHKCSACDFRGASASSVRAHKARMHRGHQASSERANSRRTMIRQCTGYACHCCTFVAATVASINSHNAREHSSVRPAITEVPVSEYDCDQCEFKSQERRSMQNHLKVHALTANEEGMYACNVCVYETNSKMGLQRHISIKHYKPRREAAKLDPDACLSCDECGFKCLNAKIMDWHRRQHEASDNAEEGNSYFCDDCDFSTWTKGQLASHIKRKHKDEDRQSEEATGEVTLDAYPCDQCDHISKNKHSLKVHVIRKHTSEFNHECEICGKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECPICHRRMVSQANLDEHVLKQHEQREDVVCDECGKTFTKQARLKIHKRVHTGVKPYTCKICGKAFARRNGLRQHLLIHTGQRPYECDICKKAFTQKTGLISHRKSHPGNHPPLPRVTIEHVLSDLLNEEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -