Apse011572.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010003020.1:2113-6983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.015 2.2 9.8 3.5 1 23 290 313 290 313 0.96 2 19 0.00062 0.089 14.2 0.5 1 23 362 384 362 384 0.96 3 19 0.016 2.4 9.7 0.2 1 20 441 460 441 462 0.93 4 19 0.024 3.5 9.2 2.4 2 23 503 524 502 524 0.97 5 19 0.0006 0.086 14.2 0.5 1 23 571 593 571 593 0.97 6 19 0.00029 0.042 15.2 0.1 1 23 599 621 599 621 0.98 7 19 0.0046 0.66 11.4 3.4 1 23 661 684 661 684 0.92 8 19 0.21 30 6.2 0.8 2 23 693 715 692 715 0.81 9 19 0.00013 0.018 16.3 1.0 2 19 748 765 747 770 0.89 10 19 0.00011 0.016 16.5 1.3 1 23 806 828 806 828 0.94 11 19 0.066 9.6 7.8 0.1 2 20 884 902 883 902 0.95 12 19 0.00071 0.1 14.0 0.3 2 23 921 942 920 942 0.97 13 19 0.0002 0.029 15.7 2.9 1 23 977 999 977 999 0.98 14 19 0.61 87 4.8 5.7 1 21 1019 1039 1019 1043 0.88 15 19 0.029 4.2 8.9 0.8 2 23 1112 1134 1111 1134 0.93 16 19 0.00064 0.092 14.1 1.4 2 23 1171 1193 1170 1193 0.89 17 19 4e-05 0.0057 17.9 0.2 1 23 1200 1224 1200 1224 0.96 18 19 0.0048 0.69 11.4 1.8 1 23 1229 1252 1229 1252 0.97 19 19 0.036 5.3 8.6 0.5 3 23 1284 1305 1282 1305 0.94
Sequence Information
- Coding Sequence
- ATGGACGACGTGATCGAGATCAGTGGCTTGGAGAGCGCCTGCAGGCTTTGCCTTACTACCGAGCAAAGTCGCTCTCCAATATTTGGACTGCCCGATACTAACGTACCCTTCGCTGAAAAAATACGAGTTTGCCTGTCAATCCAGGTAAAGTCAGACGACAAACTTTCAACCTTAGTGTGTACttcttgtataaaaaatataaaccatTGGCATTCTTACAAGGACACATGTTTAAAGGCTCAAGAAAAGCTAAATAGTTGGTTAGCTAAAAGAAACTCAATTTtaccTGTAGTGACTATAAAAGAAGAGCCAGAAGATGCAGATTATGAAAATGATACCATGCAAATTGTACAAAATGAATCAACAATtagTAATCACATTGGCACAAATGAAGATGAAACAAATGTCAATGAATGTGACATTACTTCTGCAACTAGAAGTGCACCTCATGTATTACCTGATCAATCTTCAGAAATTGAAGATAGAATGGATACAGATCTTTTTACTCCAGAAGTACAAATAAAAACCGAACCAATGGATACAGAAGATGAAGATGATTGTAATATAGATATAGAATCTGTTAACAGTGGTGAACTTTTGATCAATCCAATGGCTGTTGGAGTTTCAAACTCTAATAGTGATAGGTTTCATGGCATTGTTAGTGATTCACCTGCAAGTGAATTTAATACACCAGTTCAACCTCCAGCTAATAATCAAAAATCAAAACTACTGCATTATGTAGATGACACTGAATCAGACATTAATGCACAGAATGAAAGTAATCCTGAAGATGCAGAATTTGAGAAAATGATAACATCTGACTCCTTGACACCTGTTCAAAAAACGATCATAAGCCAATTAAAAACGTTCTCCTGCTATTCGTGCAAACGAACCTTCACTGACAGACGAGATACTCTTAATCATATCCGTTATAAGCATATGCCTGACCTGCGGCCGTTCACTTGCATTGCTTGCTTTACTGAATTTTCTGATCGAGTAGAATACCAATGGCATTGCAGTGAATCTTTTGAGTGTGCAATGAAGATTGCTCTAGTAGTTCCTAAAATTGGCCAAGAAAAGTACTTTACATGCAACTTATGTCTCAAAGTATTCAATAATCGTCGTGGGCTGCTTACGCACTTAGCCCTGCATGCAGACAATCAAATACCAAAGCCTGTTAGGCCAGCGCCAAATACCGTTAGCAcaccaacaacaacaacaacaacaacaacaacaacaacagtaGTGAAACCTGATTCTTCGCCAATTAAAAGAGCACCGCCACCAGGACCATACATGAATGGTGATCCGGCGCACAACCATATGTGCGATTTATGTGGTATGATTTACAGGTACAAGCCCAACATGATAAAGCATCGAGAGCTCTGCATGACGTTGCCCGACGATATCAGAACTTCATATCGCTGTGTGCAATGCAGTATGACTTACCTTGTATACAAGAAATTCTACACTCATGTTTTCTATGAGCACAAAAAGCGTGAAATCACGTGTTTTACGTGCCATGCCAAGTTTCCCACGGCCGACGATTATTTGAATCATCATGAGACGCATCGTGATTCTTCAAATAAAGAGGCTGGTCAGACGCAACAGCAGCTTGACGATCAGCAAGAACAAACCGAAAGCAGTTATCTAAACGATCAGTCTGATTTGAATTCGTCGAGTTACCCAACCGACGCAGGCGAAAAGTCTTTCAATTGCGCTCTCTGCAACGAAAGCTTTGCCACGAAGTTCGAGCTAAGTGAGCACCGCAACCTCCATCTCAAGGTCAAGATTTATTCGTGCGTCATTTGTCGTAGCATGTTCAGCAGCTCTGGCGCGCTCGAGGTTCACATGAAGGAACACGGTATTGATGATGCTTCCGAGCAAGCGGGTAATAGCTCCGTAGTCGAATACAGCCGGGCCAATAATTCGTTAAACGATTCTTTGATGTCGGCCGTTTCGGATCCCGGCAATGCCAATTTCCACTGCCGTCCATGTAACAGGAATTTCTCAAACTACGCAAATCTGAAGCGGCACGAACGGAATTTGCATACCAATCAGCAAAGACGTCGATGGAGTTGCAACGTTTGTAAACGGCGCTTCAAATCTGCCGAATCCCATGATGAGCATGTACGAGGAGAGCACGGGCTTGAGCCGGAGCAAGAGATACCACCGTATACAAAACAAGTAGTGCGACCTCCAACCACGCCACTTTCTTCTCCAGCTGGCAAACCACTAATGCAGTGTCCCAAGTGTCCTAAGACTTTCGCTTATCAAGGCAACCTAATACAACACTGCCAGAATGTTCATAAAGAAAACCACTTTGAACGTGTTGTTCGTCAAGCTGTGCCTGTACCAAGGCCACCAGCTCCCGTAGTAGCCGCTCCTGCACAATCGCCACGCCCGCGTATAGGTCACACGTGCGACCTGTGCGGTAAAACTTTCCGTGAAGCACAGTCACTTAAAACTCACCGAGGCTGGCATTTGCGAACAAACTATCGTCTCAAAGTCGATCAAAATGCAAGCTTGGATGAGAGAATGTTAAGTGGGCAAGGTTATCAAATGACAAGTCCACCTAAGCAGGCTAAGGCTAGGAAATCGTTTCCCAACAACCCACCTCCACagcaattaaataatatcggGAATCTGCAATGTCAGGTATGCGATGACCGCTTCAGTGATGTGGGCGAGCTCAGAAATCATTTATGGGACGTGCATTGTGCGCGTAACAAGCCCGAGAAAACCTTTGTAACTGATCTTCAATGCGAACTCTGCACGAACAAGTTCCCCGACCAGCAGGCTTTGCGGGAACACATGAAGTGGCATGCACAGAATCCGATTCTGAGCAACAACCGCAGCAGCAATTTCAGTTCGGCGAGTAAGGACGGCAGTGCTTCCACCAGCAATGCCGTAGTCACCAAGAAAATGTTCCAGTGCGACGTGTGCGGCAAGTATTACAGTAATCGCAAGATGTTTTTGCGCCACAAGAAGCTACACAAGATTGTAGCTCCCGCGACTATAATGAACTTGCAGTCGTTGCAGAGTTCGAGGCGACATTTCTGTCACGCGTGtcaaaagaattttgcgaCAGATACCACCCTCAGGCGGCACAAAGCCTCGCCTTGCCACATGAACATGGTGCGCATGCAGGTACAGGCCCCTGCCAAGAAGATTACGACTACGGCCATCGTACACCAGCCGCCACCGGAGATGTCATCGAGTCCTTTAGGAAAAAATTCAGTTAAGAATGAGCCCGAGGTGGACTTTGCTGCTGCTCAATCTTCAGCAAGCCAGCCTATGCACGTTCAACAAGCGATGAAAAAGAAACCGGTCACATGCCACATTTGTAAGACCATCTTCCCCAATATGAGCGTATTGTACCAGCATAAGCAACTCGTGCATAGGGTGCCTCCAGGAGGTGGAGCTGTTGCCACTGTCGCCAGGCCCTTCAATGCCACTCTGCAGTCGCCGAAGGCTTTTGTACCCCAAACAAGTGCAGAAGGAATGGTCTCTTGTAACGTCTGTGGCAAGCAGTTCCCCCGTATGTCTCAACTCAAGCTCCACTTTGCGCATAAGCATAAAAACAAACCGGCTAGCTTTCCTTGTACTGCGCCCGGTTGCAAGCTCGTCTTCAGCAGCAACAGCTCTCTTAAGAATCACGAGAATACACATACCAATATGATCTACAACTGTCAGCTTTGCGATAGGCACGTCTTCTCTAAGGTAGCTATGACGAGGCACATGTTGACGATGCACAAAGCAATCTACCAATCGAGAGTGAGCAAGAACAGTTTATGGACCGAGACCGACTTGACAAACTACAACGTTAAGAATTCGCAAAGTACAGCATGCCCCAAATGTAATGTCAAGTATCCAAATATGAAAGCCCTTAAGATACATTACTTCAAGTTCCATGACAAAGCATAA
- Protein Sequence
- MDDVIEISGLESACRLCLTTEQSRSPIFGLPDTNVPFAEKIRVCLSIQVKSDDKLSTLVCTSCIKNINHWHSYKDTCLKAQEKLNSWLAKRNSILPVVTIKEEPEDADYENDTMQIVQNESTISNHIGTNEDETNVNECDITSATRSAPHVLPDQSSEIEDRMDTDLFTPEVQIKTEPMDTEDEDDCNIDIESVNSGELLINPMAVGVSNSNSDRFHGIVSDSPASEFNTPVQPPANNQKSKLLHYVDDTESDINAQNESNPEDAEFEKMITSDSLTPVQKTIISQLKTFSCYSCKRTFTDRRDTLNHIRYKHMPDLRPFTCIACFTEFSDRVEYQWHCSESFECAMKIALVVPKIGQEKYFTCNLCLKVFNNRRGLLTHLALHADNQIPKPVRPAPNTVSTPTTTTTTTTTTTVVKPDSSPIKRAPPPGPYMNGDPAHNHMCDLCGMIYRYKPNMIKHRELCMTLPDDIRTSYRCVQCSMTYLVYKKFYTHVFYEHKKREITCFTCHAKFPTADDYLNHHETHRDSSNKEAGQTQQQLDDQQEQTESSYLNDQSDLNSSSYPTDAGEKSFNCALCNESFATKFELSEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKEHGIDDASEQAGNSSVVEYSRANNSLNDSLMSAVSDPGNANFHCRPCNRNFSNYANLKRHERNLHTNQQRRRWSCNVCKRRFKSAESHDEHVRGEHGLEPEQEIPPYTKQVVRPPTTPLSSPAGKPLMQCPKCPKTFAYQGNLIQHCQNVHKENHFERVVRQAVPVPRPPAPVVAAPAQSPRPRIGHTCDLCGKTFREAQSLKTHRGWHLRTNYRLKVDQNASLDERMLSGQGYQMTSPPKQAKARKSFPNNPPPQQLNNIGNLQCQVCDDRFSDVGELRNHLWDVHCARNKPEKTFVTDLQCELCTNKFPDQQALREHMKWHAQNPILSNNRSSNFSSASKDGSASTSNAVVTKKMFQCDVCGKYYSNRKMFLRHKKLHKIVAPATIMNLQSLQSSRRHFCHACQKNFATDTTLRRHKASPCHMNMVRMQVQAPAKKITTTAIVHQPPPEMSSSPLGKNSVKNEPEVDFAAAQSSASQPMHVQQAMKKKPVTCHICKTIFPNMSVLYQHKQLVHRVPPGGGAVATVARPFNATLQSPKAFVPQTSAEGMVSCNVCGKQFPRMSQLKLHFAHKHKNKPASFPCTAPGCKLVFSSNSSLKNHENTHTNMIYNCQLCDRHVFSKVAMTRHMLTMHKAIYQSRVSKNSLWTETDLTNYNVKNSQSTACPKCNVKYPNMKALKIHYFKFHDKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -