Apse002412.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010000216.1:84547-87579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.016 2.3 9.7 0.3 3 21 8 27 6 28 0.85 2 14 0.69 99 4.6 0.1 2 20 34 52 33 54 0.92 3 14 2.8 4.1e+02 2.6 0.8 1 23 215 235 215 235 0.80 4 14 0.12 17 7.0 1.1 1 20 365 384 365 386 0.94 5 14 3.9e-05 0.0057 17.9 0.2 2 23 391 412 390 412 0.97 6 14 8.5e-05 0.012 16.9 4.6 1 23 425 447 425 447 0.98 7 14 0.12 17 7.0 0.1 1 23 466 487 466 487 0.93 8 14 0.00095 0.14 13.6 0.1 2 23 493 514 493 514 0.95 9 14 6.2e-05 0.009 17.3 5.2 1 23 581 603 581 603 0.99 10 14 3.1e-06 0.00045 21.4 4.3 1 23 609 631 609 631 0.98 11 14 0.00011 0.016 16.5 5.3 1 23 637 659 637 659 0.98 12 14 3.6e-06 0.00052 21.2 0.7 1 23 665 687 665 687 0.98 13 14 0.00021 0.031 15.6 0.1 1 23 691 713 691 713 0.98 14 14 0.00039 0.056 14.8 1.6 1 23 721 744 721 744 0.96
Sequence Information
- Coding Sequence
- ATGGGCTCTATGAGTCTTGTGTGTCCTATGTGCTGTGGAGAGACTTTTAATAGCTCGGAATCACTCAAATACCATCTGCTCAGTATGACTGACAATTTGTATTGTCCTGGCTGTTCGCTGAGGACTTATTCAGTGGCCTCGTTAATTCAACATTTGGATCATTGTGGGAAGGACATGATGCATCAAGATGAAGCGCAATGTCAAAGTATGGCAACTGTTAGTGTTTTAGAAAATGATGACAATAATGCTTCACAGAATATTATCATTCATgatgaaaatgttgataagGCAATTAATGAAAGTTTTCTAGCTACTGTTAATGAAGAAGGAATAATGATTGTTGGTGAAGGCAGAACTATTCAAGTTGATGAAAATGGTGATATACAGGTTGTAGAAAAAGTTTCGGTGAGAAATAAGATGAATAAAATTGCTAGTGATGAAGCCAATGACAAAGAAGATTTGTTATCTAAAGCAACTTCTGCTTTGAATAAAGATCATaattatgatttattaaaCAGCAGTAATGGTAATGACTTAATGGAAATGGATCAAGATGATTCCATGACATTTGATGATGATTATAATATGAATGTTAAAGAAGAACCTCAGAATGAGTTACCACAAGAAGAGgaacaattattatacacttgcaATAGTTGCAATGTCAATTTTGATAGTGTAGAGGAGCACAtgcaaaaatttcataatgGTCAAGCCTATGAAGTACAAGGAGCCAAGGATCAAATAAATGATGAAACTGTAGAACCTACAATGGAATCACTAACAACAGAAACGGTAACAACTCCTGTAACTGATACAAAgtcattacaaaaattaaatccaATTAGGCCAACTAGAgctgcaaaaagaaaacaacttCAAAAACAAGCCTTGAACACATTGAAAACTGAGGAATGCGTTGATAGTGATGGAAGATTGTATACaagaaaagttgtaaaaattgaaagattTTGGGATAGAACTCCAATTACTCTGTCTTCTACAAAAGCTCCaatgattgaaaaatttttttccaatgttGAAGGAGTGAagGTCAAAGACAAAAGTGTAACAGTTGCTCCAACAAAAATGTACAGATGCAATCAGTGTCTAGagcaatttgcaaaaataagtgaTTTTAAAGTTCATGAGTGCCTTCAAGGAAATAATCAGTGTGACCAGTGTAATGAAACATTTCCAACTCCCAAAGCCTTGCAGACTCACGCGAAAATTCACGAAACTGGAGAATATCTTACTcttaatcaaaaaatatttacatgcaACACATGCGGAACCAATTTTTCTACTCATAAAAGTCTGCGGTTGCATTCAAGAATGCATCAACCTGTTAAAGCTCGTCACGTTGACGCTCCCGAGGGTACAGAAGAAGAAACCTTCGAGTGCGATGAGTGTGGTGCAACTCTTTCGGAATCGTATAGAACAGCACACATGGCTCTACATACGGGAAACGCCGCGACGTGCGGAGTCTGCAACCGCAAGTTCGATTCTCAGGCGAGCTTGGAGATGCATGCAGCTGTTCACGTAGAGACAGCGAATGCAAATGCAGCAGCAAACGCCGCTGTGGCAACAGACTTGCTTGTTGCTGCCAACCAAAACTCGATTGACCCGATCCTTTCAAACGCAGGCATTAGTGGACCCCTAGTCAGTGGGCCGTCGGTAGCTGCAGCAGtcgaagctgctgctgcagccgaaGAAGCTGAAGCTTCGAAGGAAAAGCCGTACAAATGTCAACATTGCGGACGCCGGTTTACTAGACCTCACGAGAAAGTGAAACACGAAAGGATACACACCGGAGAAAAGCCCCACGTTTGCGAGgTTTGCGGTAAGAAGTTTCGAGTATCTTATTGCCTGACGTTACACATGCGAACTCATACTGGAGTAAGACCGTACCAATGCCAGCACTGTGGTAAACGGTTTAAGGCTTCATCAGTGTACAACCATCATCTACTGACACACGGAGAGGAACGTGCTTATAATTGTCCCTACTGTCCTAAAACATTCAAAACTAGAGTGCAATTAGCGGGACATAAAAACAGTCACACAAAGCCTTTCCGCTGCACTGAATGCTCGCGACCATTCGCTTCGTTGTATGCAGCTCGAGCCCACATCGAGACACATAAAAAAGACAACAATCTCAAGTTCTGCTGCCACATTTGCGGCGCCTCGTATGGACGAGCGTTTGCCCTTAAAGATCACTTGAAAAATGCGCATAATGAAGACAACGTAGAAGTACCGCCCGAACCCGTACATGAAGAAGAGGTGCAGGAAATCGAAACTTATCTACTGAGAAACGACGTAGTTGAAGAAGTAGAGCTTATAGTCCCATCACCCATACCCGTCACAGATCTCGAAGAAGAGGATTAA
- Protein Sequence
- MGSMSLVCPMCCGETFNSSESLKYHLLSMTDNLYCPGCSLRTYSVASLIQHLDHCGKDMMHQDEAQCQSMATVSVLENDDNNASQNIIIHDENVDKAINESFLATVNEEGIMIVGEGRTIQVDENGDIQVVEKVSVRNKMNKIASDEANDKEDLLSKATSALNKDHNYDLLNSSNGNDLMEMDQDDSMTFDDDYNMNVKEEPQNELPQEEEQLLYTCNSCNVNFDSVEEHMQKFHNGQAYEVQGAKDQINDETVEPTMESLTTETVTTPVTDTKSLQKLNPIRPTRAAKRKQLQKQALNTLKTEECVDSDGRLYTRKVVKIERFWDRTPITLSSTKAPMIEKFFSNVEGVKVKDKSVTVAPTKMYRCNQCLEQFAKISDFKVHECLQGNNQCDQCNETFPTPKALQTHAKIHETGEYLTLNQKIFTCNTCGTNFSTHKSLRLHSRMHQPVKARHVDAPEGTEEETFECDECGATLSESYRTAHMALHTGNAATCGVCNRKFDSQASLEMHAAVHVETANANAAANAAVATDLLVAANQNSIDPILSNAGISGPLVSGPSVAAAVEAAAAAEEAEASKEKPYKCQHCGRRFTRPHEKVKHERIHTGEKPHVCEVCGKKFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGEERAYNCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIETHKKDNNLKFCCHICGASYGRAFALKDHLKNAHNEDNVEVPPEPVHEEEVQEIETYLLRNDVVEEVELIVPSPIPVTDLEEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -