Apse002349.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010000210.1:56840-58090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.8e-05 0.011 17.0 1.1 1 23 23 46 23 46 0.95 2 13 0.0028 0.4 12.1 0.9 2 23 54 75 53 75 0.97 3 13 0.00035 0.051 14.9 0.4 3 23 85 106 84 106 0.97 4 13 0.0017 0.25 12.8 0.5 1 23 121 144 121 144 0.96 5 13 0.004 0.57 11.6 0.1 3 23 153 174 152 174 0.94 6 13 0.00036 0.053 14.9 0.0 1 23 182 204 182 204 0.92 7 13 5.7e-06 0.00082 20.6 2.6 1 23 208 231 208 231 0.97 8 13 0.041 5.9 8.4 0.7 3 23 239 259 237 259 0.95 9 13 8e-05 0.012 17.0 0.1 3 23 267 288 266 288 0.98 10 13 0.051 7.4 8.1 3.6 1 23 295 317 295 317 0.97 11 13 0.11 16 7.0 1.5 2 23 324 344 324 344 0.87 12 13 7.2e-07 0.0001 23.4 1.6 1 23 350 372 350 372 0.97 13 13 1.1e-06 0.00015 22.9 1.2 1 23 378 400 378 400 0.98
Sequence Information
- Coding Sequence
- ATGATCCCAGAATCGAAAACCCGCGTGTTATCGAAAACGACCTCGATCCATCCTAGACAAAGCGCCTACAGCTGCCCCGAGTGCGGCAAGTCATTAAAGACCAAGAACTCGTTAACCTTTCACCTAAAGTACATCCACGAGACAAAAAGCAAGAAGCTCAAGTGCCAGCAGTGCGATTACCGCACGCGCTGGCCGAGCAGCCTGAGAAACCACCTGCTGCGCCACGAGACACCGGAGACCGGCAGCAAAGCTTGCGACCTCTGCGAGCGCTCCTTCTCAACGGAGCTCGACTTGCGTGGACACCGGCGTCGCGAGCACGGGCCGAGCATCGACCCTCGGAATCCCAAAGCTCCTGCCACCTATGCCTGCGAGCTGTGCTCCAAGCGTCTTTCAACGCGGCTGCAGCTCTCGCAGCACCGGGCTACCGAGCACCCTGAGCACTCCTCTCGCCCTCTCTGTGTGCTCTGCGGCAAGCTCTACCGGAGCAACAACGCTTTAGAAGCCCACCTCGAGAATTCGCACGGGAATCGGCAGGTCGTCCGCTACGAGTGCGACCTCTGCGGCCGGAGCTTTCGCAGCAAGCCCGGGATCGTGCTCCACTTAGCTGGACACGACAAGCGCTTCAACTGCGAGCAGTGCGGCAAACGCTTTGCTACAGCAAACCTACTACACCGGCATCAGACCACTCGGCATCAGGAGGACGCTCGAGTCTGCTGCGAGCGTTGCGGCAAGCTCTTCCTCGAGCTCGCGGCCCTGCGACGACACCTGCTCAGCCACGAGGATAGCAGAAGCCACGGCTGTCCCGACTGCCCGGCCACCTATCGCTCCGCCGGCGCTCTCAAGCTCCATCGGCGTCGGCTCCACGAGCCCCGGCCCGCTCGCTTCGACTGCGAGCTCTGCGGCTTTTCCAGCCTGCACCGCAACAGCCTCAGGCACCACATGGCCAGGCACAACGGGCGAAACAATGCCACCTGTCATCTGTGTGGAAAAGTCGTTACCAAGGCTCATCTGCCGCTCCACGTTAAGCTGCACGCCGGCGAACGACCGCACGTCTGCGAGATTTGCGATAAGAGGTTCACTACCAAGAAGAATCTTGACGTCCATTGGAGGCTTCACGTTGGGGTTAAACCTTACGAGTGCACCAAGTGTTCGAGAAGATTCACTCAGCCTACGTCGCTAAAGGCTCATTTGAAAGCGCATGATAAGGGCAAAGGTGGCCGTCTGAAAAAGAAGCCTCTGTTGAGCGATTAG
- Protein Sequence
- MIPESKTRVLSKTTSIHPRQSAYSCPECGKSLKTKNSLTFHLKYIHETKSKKLKCQQCDYRTRWPSSLRNHLLRHETPETGSKACDLCERSFSTELDLRGHRRREHGPSIDPRNPKAPATYACELCSKRLSTRLQLSQHRATEHPEHSSRPLCVLCGKLYRSNNALEAHLENSHGNRQVVRYECDLCGRSFRSKPGIVLHLAGHDKRFNCEQCGKRFATANLLHRHQTTRHQEDARVCCERCGKLFLELAALRRHLLSHEDSRSHGCPDCPATYRSAGALKLHRRRLHEPRPARFDCELCGFSSLHRNSLRHHMARHNGRNNATCHLCGKVVTKAHLPLHVKLHAGERPHVCEICDKRFTTKKNLDVHWRLHVGVKPYECTKCSRRFTQPTSLKAHLKAHDKGKGGRLKKKPLLSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -