Apse007117.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010001050.1:16547-21069[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.4e-05 0.0035 18.6 0.3 1 23 266 289 266 289 0.98 2 15 1.9e-05 0.0027 19.0 6.1 2 23 296 318 295 318 0.93 3 15 0.0051 0.74 11.3 1.0 1 23 324 346 324 346 0.99 4 15 1.5e-05 0.0022 19.2 2.3 1 23 352 374 352 374 0.97 5 15 2.1e-06 0.0003 21.9 1.3 1 23 383 405 383 405 0.97 6 15 1.8e-05 0.0027 19.0 0.7 1 23 411 433 411 433 0.98 7 15 4.2 6e+02 2.1 0.4 1 23 462 485 462 485 0.89 8 15 3.7e-07 5.3e-05 24.3 1.3 1 23 499 521 499 521 0.98 9 15 4.5e-06 0.00064 20.9 5.1 1 23 545 567 545 567 0.99 10 15 0.0017 0.25 12.8 1.1 3 23 575 596 573 597 0.92 11 15 0.0014 0.2 13.1 0.7 1 23 602 624 602 624 0.97 12 15 0.00036 0.053 14.9 1.2 1 23 630 652 630 652 0.97 13 15 6.1e-05 0.0088 17.3 2.1 1 23 658 680 658 680 0.96 14 15 0.0023 0.33 12.4 0.0 1 23 686 708 686 708 0.97 15 15 0.029 4.2 8.9 2.6 3 23 716 736 714 737 0.91
Sequence Information
- Coding Sequence
- ATGGAGCTGATGGAGACCAAGGATATACAAATAGAAGTGAAAACTATCAACAGTGATGGGATTTTGGTCAGAAATACCAAGGAGTTCAATGataaaggagaggaaattaaGACTACAGAGTACTTTCTGGATGTTGATGGTCAAATTATTGATGGAGAAATAGAGCAGTCGGGATTTGTAGCTGTTGGAGAAAACTGTGATGGTAGTGACGAGGAACACTATATTGCTGTGGAAGTGGAAAATCCAGGTGACATTCATTTGAATGAAAAGAATGTGATAAGCTGGAGTGAAATTTGTAGGATATGTGCAAACACGAGTAATCAGTTTGTACCCATTTTTACTGATGATGGGGTAGATTATGACTTgtgcaataaaattaatagttatttACCTGTAAAGGTTTCTGAAGATGACACATTGCCTCATCAAGTGTGTTATAATTGTGCAGCAACTTTACTTGCATGGcatgaattatttaaaggTTGTATCAATGCACATCAGCGACTTACTGAATTGCAAACTAGGATTATTACAAGAGATGAGACTGaagatacaaaaatgaaagaagatGGAGAAGAAGATGATTGTAATACAGAAACAGCAAGATGTGTGAATTTCGGAACGGACGTCATCATGACCTTCGTAACGTCAACGTCGAACGCGCAAGAGGTAGAATCAGTGCCGGCGGcgaagaaggaggaagagaagccGGCCAAGGTAGTCGACGCCAAGGCCGTGGAGAGCCGCCGGGCGGAGGCGGCGCGCGCCCGGGTCGTCGTCGACGGGGCGACGCTGTACCAGTGCCCGGAGTGCCCCCGGCTGCTCAGCACCGCGTACAACTACCAGGCGCACAGGCGGCGggtgcacgcgcgcgagcggcccTGCCACTGCTCCCACTGCGGCAAGAGCTTCAGCACCGGCTCCTCGCTGCGCCGGCACGTGCGCGAGGTCCACGAGAAGATCAAGGAGTACAAGTGCGACTACTGCGAGCGCCGGCTCGCCTCGAGGGTGTCGCGCGACGAGCACCAGCGCACCCACACCGACGAGCGGCCCCACGAGTGCGGCCTATGCGGCAAGCGATTCCGGCAGCGCGCCTCCCTCTCCGTTCACAGGCGCTTCCACGCCGTGGAGACGAGCAGTTTCGGATTCAATTGCCAAGTCTGCGGCCGCGACTTCCGGCGCAAGCAGGACCTCCAGCGGCACGAGCTCACCCATACCGATCTCATGCCTTACGCTTGCAGCCTGTGCGACAAGCGCTTCCGTAGCTCCGCCTCGGCGATTCGGCACAGGCAGACCCACGAACGCACCACCGAAGATTCCAAAACCGAGGAGGAAAGTGAGGAAAATAATGAGGCCGATAATAGCAGCAGCAAGACGTACAAGTACATGTGCGGCGTCTGCGAGGAGATTTACAACGAGGAGCTCGAGCTGATCTGCCATCTGAAGAAGCAGCACAACGTTACGACCGCACGGAACTCCGGCAGTACGCTCCGCTACGAGTGCAACGTCTGCGGCAAGTCCTTCTCGAAAAAGTGCAACCTCGTCGTGCACGCGCGCATCCACGAGCGCAAGCTCAGCGGCGAGGACGCCCTCATCGAGAGCGCCAAGTTCTTCGACGATGGTGTGCCGCGCTACCGCTGCCCGGACTGCCAGCACGTCTTCTCGACGAAGCACAGCTGGACGCGCCACCGGCGCGTACACACCGACGAGCGGCCCATCATCTGCCACATCTGCGCCAAGAGCTTCCGCATCATAACCGACCTCAAGCGCCACATCAGCGACGTCCACCACAAGATCAAGCGCTACGCCTGCGACATTTGCAACAAGTGCTTCGCGGCCAAGGCGACCCGCGACGCCCACAGGCGCATCCACACCGGCGAGAAGCCCTTCTGCTGCGACGTCTGCGGCAAGAACTTCCGCTCCATCAACCTCCTCGGCATCCACAAGCGCATCCACCGGGACTACCGGCCTCACAAGTGCTCCCACTGCGAGAAGGCCTTTCGCGACAAGCAAAAGCTCGCCGCCCACGAGGCCATACACACCGGCGTCAGGCCTTATCCCTGCGACATCTGCGGCAGGTTGTTCGCCGCCAAAGGCGAGGCCACTCGGCATCGCAGCGTTCATTTTGATGAAAAGCCCCATCTTTGCGCGGCTTGCGGATTGGGCTTCAGATTGAGCCGATACCTTAGGAACCATATCAAACAGCATCATTCGAGCGAAGCCGACGCTATGATCAAAGCCCTCGACAAGAAttaa
- Protein Sequence
- MELMETKDIQIEVKTINSDGILVRNTKEFNDKGEEIKTTEYFLDVDGQIIDGEIEQSGFVAVGENCDGSDEEHYIAVEVENPGDIHLNEKNVISWSEICRICANTSNQFVPIFTDDGVDYDLCNKINSYLPVKVSEDDTLPHQVCYNCAATLLAWHELFKGCINAHQRLTELQTRIITRDETEDTKMKEDGEEDDCNTETARCVNFGTDVIMTFVTSTSNAQEVESVPAAKKEEEKPAKVVDAKAVESRRAEAARARVVVDGATLYQCPECPRLLSTAYNYQAHRRRVHARERPCHCSHCGKSFSTGSSLRRHVREVHEKIKEYKCDYCERRLASRVSRDEHQRTHTDERPHECGLCGKRFRQRASLSVHRRFHAVETSSFGFNCQVCGRDFRRKQDLQRHELTHTDLMPYACSLCDKRFRSSASAIRHRQTHERTTEDSKTEEESEENNEADNSSSKTYKYMCGVCEEIYNEELELICHLKKQHNVTTARNSGSTLRYECNVCGKSFSKKCNLVVHARIHERKLSGEDALIESAKFFDDGVPRYRCPDCQHVFSTKHSWTRHRRVHTDERPIICHICAKSFRIITDLKRHISDVHHKIKRYACDICNKCFAAKATRDAHRRIHTGEKPFCCDVCGKNFRSINLLGIHKRIHRDYRPHKCSHCEKAFRDKQKLAAHEAIHTGVRPYPCDICGRLFAAKGEATRHRSVHFDEKPHLCAACGLGFRLSRYLRNHIKQHHSSEADAMIKALDKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -