Apse011936.1
Basic Information
- Insect
- Anagyrus pseudococci
- Gene Symbol
- -
- Assembly
- GCA_030522585.1
- Location
- JAPYYQ010003312.1:6853-11252[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00056 0.08 14.3 5.6 1 23 286 308 286 308 0.98 2 14 0.00014 0.02 16.2 0.7 2 21 322 341 321 345 0.91 3 14 0.00069 0.099 14.0 2.7 3 23 432 452 431 452 0.97 4 14 6.9e-05 0.0099 17.2 6.0 1 23 494 516 494 516 0.97 5 14 0.00015 0.022 16.1 0.6 1 20 521 540 521 542 0.95 6 14 0.0038 0.55 11.7 0.3 2 23 553 574 553 574 0.97 7 14 2.1e-05 0.0031 18.8 0.6 2 23 612 633 611 633 0.97 8 14 2.7e-05 0.0039 18.4 1.7 1 23 638 660 638 660 0.95 9 14 0.00013 0.019 16.3 2.4 1 23 666 688 666 688 0.98 10 14 5.9e-06 0.00085 20.5 0.4 1 23 706 728 706 728 0.95 11 14 6.8e-07 9.8e-05 23.5 0.6 1 23 734 756 734 756 0.98 12 14 3e-05 0.0044 18.3 0.2 1 23 762 784 762 784 0.97 13 14 0.00011 0.016 16.5 4.1 1 23 790 812 790 812 0.96 14 14 0.008 1.2 10.7 0.4 1 20 818 837 818 839 0.89
Sequence Information
- Coding Sequence
- ATGGATGAACTggaggacgaggaggcggTCAACGTCGCCGCGTCGTCGGGTGAGCTGCAGCCGCCGCCTGGTCACCAGGAACACATTGACATCTGCCGCGTCTGCCTTGGCGGTGCGGCTTCGATGCACGGCCTCTTTCACAAGGACGACGTGCCCTCGCTCGCCGACAGGCTCATGTTCCTCGCCAACATTAAGATGAACCCAGGAGATGGATTGCCTCCACAAATTTGTAGTGATTGTGAAGATAAACTTGAACTAGCttacaaattcaaaatacaAGTAGAACATGCTGATTCGTTGTTAAGACAGAAACTGGCTCTTGATGTTAAAGaagaattgttttttaatgatGTAGATGATAATTTAACAACTCATAGGCACAATGTTGAAGTGATAACGGAAGatagtttattattaaaagatgACATGGAATTGCTAAATGttcaaaaaataaAAAAggatgaaacaaaaaatagtacTATGCCATTAGAGGTTTCTTTTCATGAAGATGATGACATCTTAGATTTTCATGGTTATGAAGACAATCATGTAGTTGATTCTGATAGTgaaattgatgaaaatgatGACAGTAAAACAGTAAAAGaagcaaagaaagaaattctTGTAGAAAGTGTAACTCCATTAAATAGGacacaaaataatgaatttgaaGTAATTGACAAATTACAAAATCCTACCAAATTAAATGAAGATGTACTTGATGcccaaatattaaaaaaaagaaaattagattCATCAGATGCTGATGAAGAGTGTAGGAAAGAACCAATTTCAGAAGTAGCTGTTAATGAAAAGTCCATCAAATCATCACCAAAGGATGAACATAGCAAAAAACACAAATGTTCTCACTGTTCTCTTGCTTTCcggatgaaaaataatcttttgaAGCATTTACAAAGTCACAGTGATTTAAAAAGTCCCAAGAAACTTATCAATAATTTGCGCTGTGGTCagtgcaataaaaattttggaaataagCAGACTCTTAAAAAACACATGATAGCAACTGGtcataaaacaaacaaacaagaaGAAGTGTCTgtagaaaatacaaataaacgAATTAAAAGGGTGGCAGCAAAGGCGGCGCAAAAAATAATCGACAGAATCACGACAGATTTAAGTTTAGATGAGTCggacgaggaagaagaaacAGAACAAGACAAGAGTAAAGATTTTGTAGATGTTAAAGAAGTGAAGGCATCTGAGAAGGAACACGAAGACCTGACCCAAGTGCCAATAAAAATCCATATAATTTCAAAGCCAGTGTTTTGTGAAACTTGCGGCCAAAAGTGTGCATCGAAACAGTCGCTTACGAGGCACATGGAGTTACATTCGAGGGACGAAGGTGCGCAGAAACAAGAGAAAACGGAAAAGGTCGGAGATCGTCCGGAGGACGATGAAATAGAGGACGACGATGACTACGAGGGCGGTATCGATGACTGGCAATTGGACAGCCACGAGTGTCCGACCTGTAAAAAGTGTTACAGCACAAAGAAGTCGCTGCTACGCCACCAGCTCTTGCACGAAGAACCGAATTACGAATGTGATATATGTAACGTTAAGTTTTACCGCAAAGATAAGCTCAAAGCCCATTATGACAAATGCTCGGAGAAGAATCCCGATCAGGTGCGAAAGTGCAATATCTGCGGTGACAGTTTCGAAAACAACGAAGTTCTACGTGAACATCGGGCCAAGCACGTGGACGAAGGCATTCTGACCGAAGAGGACTTGCTGGAGATCGAGCCTCGGTCCGAGGATAAAAATGGCGAGAAATTACCGCGTAAGCGACGAACGGATATCATCGGCCTTGAGTGCACCGAATGCAACAAGCAGTATACCTCGCGGAAGGGATTACTGCGGCACATACAGGTGCACGAAGGTAAAAAGTACTTGTGCGACATGTGCCCGAAGAAGTTCTACAGGCAGGAGCATCTGAAAATTCACGTGGCAAAGCACAATATGGTGAAACCATTTAAATGTCAGCGATGCTCGAAGCGTTTCATCAAAGAAGAACAGCTGAACAATCACTTGTTAAAGCACGAGCGTACGGTAAAGAAGCCGAAAGAGCCGTCAAGCGACGGAGGCAAGCGCTTCCTTTGCGAAATCTGCTCAAAGAGTTTCACGCAGTCGACGACTTTGGTGGCCCACCTGCGCGCTCATAACGGCATCAAACCCTTCATCTGCGAGGTCTGCTCGCGGCCGTTCACCACGAACGCCTACCTCAAGATGCATATGCGCACACATACCCAGGAGCGACCGTACATATGTCAGTATTGCTCGCGTGCATTTGCTCGCGCCGACACCCTCGCCAACCATTTGACCTCGCACACGGGCGAGGCGAAGTATCACTGCAAGTACTGTCCAAAGAACTTCCGCCGTCTCAAGTCGCTCAAGGAGCACGTTTTTATACACACCGGTCAGCGGCCGTACGCCTGTCCGACCTGCGATCGCAGGTTCAATAATAACGGCAGCCGCTACGCTCACAGTAAGCGTTGTAAGCAGAATCACCAGCAGGCTCGGCAATCCCAGGTGGTTAGCCAAAATAGTCAAACCGAACAGGAGCAGGAGCAGGAACAAATTGAACCAGAAACTGTGCAGCTGCAGTTGATTGAACAGTCGGATCTTCAGAATAACGTACAACAGTTGCAGTCACAAGTCGTGCAGAGGATAGGCCAAGTAACGACGATCAAACCTCAGGGCATTAAGACTATTACAATAGCCAGACCCGTGGATGGAACACTTGGTCAACAGCACGTCGTGGGTCATCAGGAAATCCTCATGCCTCTGATTCTGCCATTCACAGTCACGTTAGGCGACGTCAATGACGAGGTCATTTTGCCTGAGGTCACCAAGATCTTCACGACGTAA
- Protein Sequence
- MDELEDEEAVNVAASSGELQPPPGHQEHIDICRVCLGGAASMHGLFHKDDVPSLADRLMFLANIKMNPGDGLPPQICSDCEDKLELAYKFKIQVEHADSLLRQKLALDVKEELFFNDVDDNLTTHRHNVEVITEDSLLLKDDMELLNVQKIKKDETKNSTMPLEVSFHEDDDILDFHGYEDNHVVDSDSEIDENDDSKTVKEAKKEILVESVTPLNRTQNNEFEVIDKLQNPTKLNEDVLDAQILKKRKLDSSDADEECRKEPISEVAVNEKSIKSSPKDEHSKKHKCSHCSLAFRMKNNLLKHLQSHSDLKSPKKLINNLRCGQCNKNFGNKQTLKKHMIATGHKTNKQEEVSVENTNKRIKRVAAKAAQKIIDRITTDLSLDESDEEEETEQDKSKDFVDVKEVKASEKEHEDLTQVPIKIHIISKPVFCETCGQKCASKQSLTRHMELHSRDEGAQKQEKTEKVGDRPEDDEIEDDDDYEGGIDDWQLDSHECPTCKKCYSTKKSLLRHQLLHEEPNYECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEVLREHRAKHVDEGILTEEDLLEIEPRSEDKNGEKLPRKRRTDIIGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDMCPKKFYRQEHLKIHVAKHNMVKPFKCQRCSKRFIKEEQLNNHLLKHERTVKKPKEPSSDGGKRFLCEICSKSFTQSTTLVAHLRAHNGIKPFICEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNHQQARQSQVVSQNSQTEQEQEQEQIEPETVQLQLIEQSDLQNNVQQLQSQVVQRIGQVTTIKPQGIKTITIARPVDGTLGQQHVVGHQEILMPLILPFTVTLGDVNDEVILPEVTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -