Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_030522585.1
Location
JAPYYQ010000239.1:57827-62387[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.5e-15 6.6e-12 46.2 0.2 3 44 632 673 630 675 0.95

Sequence Information

Coding Sequence
ATGCTCGCGACGATATCGCCGAAGAAGGACGGCAGCCCGAACCTCAAGTTCTTCGACTCGGCGGAGGTCCTCGCCCAGCTCGACTCCGTCAAGCAGTGGCTCCTGAAGAACGCGAAAAAGTACATTCAGACAGATCCACCAACAAATAAGAGTTTATCTACTCTAGTTGTACAAATTCTTCAATTCCAAGAGGATAAtcttggaaaaaatgttactaaGCCTCCTATGACAAAGATTCCTatgaaatgttttttagattttaaacCAGGGGGTGGATTGtgtcaaattttattaacagcTTTTAGATTTAAACAAGAACAAGGATGGCGGCGTATAGATTTTCCTGTTGGAAAGtcgGGCACTCGAATAGACAGAATGATTGAAATGCTTATTGCAATAGAGCGAGCACTAGTTCAAAGTAGGTGTTTGACTATACCAAACGTATTTGTGAAACCTGAAGTTGAAAAAGCAACTGCAGTAAAAGTTAAAGAATTGGTACGCCGGCATCAAGGAACAATAGCAGAAAGTGAAGATGAAGCTACTCACATAATTTACCCTCCTGTTGATTGCTTAGATGAAGAATATGCAAGGCCATGCTTTCGTAGAGATCGATCTGTATTACTGCACTGGTACTATTTTCCAGATAGTTATGATTCTTGGGTAAATGTGGATCTCCCTTGGGATTATCCTGAAGCAGGTCTtggaaattttacaacaaagTCAGTGTACAGAGTTGGAGCTAATTGGATATCAGATATAGATCAGTACAATGAATGGATGAATGAAGAAGATTATGAAGTAGATGATAATGGACAGAAAAAAGTTCATAAATTTAGATTATCTGTTGATGAACTTATGACAGCACCTCCTTCATCAGCtaaaaaacagaaaaggaaaagatCACCTTCTCCTCCACCAAAAATTGGCAAAAGAAAGAGTGGACGAGCTCCATCTGGTGTACAAGGTATGTCAAACGCATCAACAGGACCAAAGAAATCTCGAGGTGGTgttgatgaagaagaagatttAACACAGGGTATGGAAGATCCACCTGCAGAACCAAGGATAATGGAAGTTGTAACAACTAACTCTAATGCAACAAATTCAAGTCAAAATAGCAGCTCTGGGGGTGGTATAATTTCTAGTAGTAAAAAGCAAGACAATGAATTGCAACCATTAAAATCAGGAAACATGGCGGACCTTGATGAGGCTCCTGAAGgAGATAAAAGTAATTCACAAGCTTCCCAAGATAGAGAAGAAAGGGATACAAGTAAAGAAAGAGGGGATGGCAATAAAAGTGATGAGCCAGAAGATAATGTTACAGAGCAAACTCATCACATCGTTGTGCCTAGTTATTCAGCTTGGTTTGATTACAATTCTATTCATACGATTGAGAAGCGAGCTCTTGCCGAATTTTTCAATGGCAAGAACAAATCGAAAACAccagaaatttatttagcatACAGAAATTTTATGATTGATACGTACCGCTTAAATCCTACCGAATACATTACTTCAACGGCATGcaggcGTAATTTGGCTGGTGATGTTTGTGCTATAATGCGCGTACATGCCTTTTTGGAGCAATGGGGTCTTATCAACTACCAAGTTGACGCGGATTCTCGGCCTACGCCCATGGGCCCACCACCTACTTCTCATTTCCATGTACTATCAGACACGCCCTCCGGACTTGCCCCTGTCAACCCCAATCCTCCGAAGACTCCACAACCATCCGCGGCAAAAACACTGCTGGATCTCGATAAGAAGCCCATTATTACGGACGAAAAACtgcccgctgctgctggaccCATGGCCAATTTCGGTCTTAAAATCGATCAGTATTCGAAAAAACCTGCagtgttgaaaaataaacaagctgCGGGAGCGACGCGTGATTGGACGGAGCAAGAAACATTACTGTTGCTTGAAGCTTTAGAACTCCATAAAGATGATTGGAATAAGgTATGTGAACATGTAGGTTCGAGGACCCAAGACGAGTGCATTTTGCACTTCTTAAGACTGCCTATTGAAGACCCGTATTTGGAAGAACCCGAAGGGTTAGGGCCTTTAGCATACCAGCCTATACCTTTTTCAAAGGCTGGCAATCCTATTATGAGTACGGTTGCTTTTCTCGCGTCCGTGGTCGACCCTAGAGTTGCGGCAAGTGCTGCAAAAGCTGCGATGGAGGAATTTGCCACAATCAAAGATCAAGTGCCTCCTGCTTTATTGGATCAACATTTAAGAAACGTACAAGCAAGTGCCAATTCTGATGGTAAATTCGATCCAGAGGCAGGACTTGCACAATCAGGAATAGCTGGTACGGAGCCACCAGAACCGCCAGAGGAACCAAACAGTACTACAGCAAATGCCTCGGGTCAACCAACTCCTGCATCTGCGACATCACCACAATCGGCAACGACTCCGACAGCAGATggcaagaaagaagaaaatgcaGAAAAGCCCAAAGAGGGTAGCACAAGTGGTAGTGGTGCACCAACGCCTCCGCCAGAGGATAGCGAACAGCCTGCACCAACTGCACCGAAAAAAGAAGTTGAAGCCACCGAAAATGAAACTAGTACTGAACCTCAGGCAGCTCAACCACAACAACCAGAACCAGAAAAGATGGAAGTGGACGCAaaggaaaatgaagaaaatgataCAAAGGCCTCAAAGATTGATGGTGAAGAAGTTAATAGCGAggctaaagaaaagaaagataagATTGTCAGGGATGCACAACTGCAATCGGCTGCAGCAGCTGCccttgctgctgccgctgtaaAAGCTAAGCATTTAGCAGCCGTAGaggaaaggaaaataaaatctcTAGTGGCACTTCTGGTGGAAACACAAATGAAGAAGCTCGAGATTAAACTACGTCATTTCGAAGAGTTAGAAACGACGATGGAACGCGAACGTGAGGGTCTCGAATACCAGAGACAGCAGCTCATTACGGAACGGCAGCAGTTTCATCTTGAACAACTGAAGGCAGCCGAATTCCGGGCGCGGCAGCAAGCGCACCAGCGGCTTGCtcaggagcagcagcaacaacagcaacagcagcaacaacaacagcagcaacaacagcagcagcaacaagcacagcagcagcaaactCAAAACCAACATCAACCGCCATGGCAACCAGGCGGTAATCCGCCAGTGCAGGCAGGTGCTCCTCCGCAAGCCCCTGGTGCACCGCAGCACCAGGCTCCACCGCTAACGCAGCAGCAACCGCCACAACCACCCAGTCCGCAGACgacgccgcagcagcagccgcacaCGCCTCCGCAGCAAGCGGCGTAA
Protein Sequence
MLATISPKKDGSPNLKFFDSAEVLAQLDSVKQWLLKNAKKYIQTDPPTNKSLSTLVVQILQFQEDNLGKNVTKPPMTKIPMKCFLDFKPGGGLCQILLTAFRFKQEQGWRRIDFPVGKSGTRIDRMIEMLIAIERALVQSRCLTIPNVFVKPEVEKATAVKVKELVRRHQGTIAESEDEATHIIYPPVDCLDEEYARPCFRRDRSVLLHWYYFPDSYDSWVNVDLPWDYPEAGLGNFTTKSVYRVGANWISDIDQYNEWMNEEDYEVDDNGQKKVHKFRLSVDELMTAPPSSAKKQKRKRSPSPPPKIGKRKSGRAPSGVQGMSNASTGPKKSRGGVDEEEDLTQGMEDPPAEPRIMEVVTTNSNATNSSQNSSSGGGIISSSKKQDNELQPLKSGNMADLDEAPEGDKSNSQASQDREERDTSKERGDGNKSDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALAEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDADSRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKTLLDLDKKPIITDEKLPAAAGPMANFGLKIDQYSKKPAVLKNKQAAGATRDWTEQETLLLLEALELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEPEGLGPLAYQPIPFSKAGNPIMSTVAFLASVVDPRVAASAAKAAMEEFATIKDQVPPALLDQHLRNVQASANSDGKFDPEAGLAQSGIAGTEPPEPPEEPNSTTANASGQPTPASATSPQSATTPTADGKKEENAEKPKEGSTSGSGAPTPPPEDSEQPAPTAPKKEVEATENETSTEPQAAQPQQPEPEKMEVDAKENEENDTKASKIDGEEVNSEAKEKKDKIVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLAQEQQQQQQQQQQQQQQQQQQQQAQQQQTQNQHQPPWQPGGNPPVQAGAPPQAPGAPQHQAPPLTQQQPPQPPSPQTTPQQQPHTPPQQAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01468781;
90% Identity
iTF_00877791;
80% Identity
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