Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063571.1:1261871-1272918[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.76 51 5.2 1.0 1 23 299 322 299 322 0.92

2 8 0.03 2 9.6 4.4 2 23 329 350 328 350 0.96

3 8 0.00063 0.042 14.9 4.1 2 23 382 403 382 403 0.98

4 8 0.0067 0.45 11.7 0.3 1 23 407 430 407 430 0.93

5 8 1.6 1e+02 4.2 0.1 2 20 448 466 447 468 0.91

6 8 2.1 1.4e+02 3.8 7.7 3 23 534 555 532 555 0.94

7 8 2.7e-07 1.8e-05 25.5 0.4 1 23 596 618 596 618 0.99

8 8 8e-05 0.0053 17.7 0.2 1 23 624 647 624 647 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.76	51	5.2	1.0	1	23	299	322	299	322	0.92
2	8	0.03	2	9.6	4.4	2	23	329	350	328	350	0.96
3	8	0.00063	0.042	14.9	4.1	2	23	382	403	382	403	0.98
4	8	0.0067	0.45	11.7	0.3	1	23	407	430	407	430	0.93
5	8	1.6	1e+02	4.2	0.1	2	20	448	466	447	468	0.91
6	8	2.1	1.4e+02	3.8	7.7	3	23	534	555	532	555	0.94
7	8	2.7e-07	1.8e-05	25.5	0.4	1	23	596	618	596	618	0.99
8	8	8e-05	0.0053	17.7	0.2	1	23	624	647	624	647	0.98

Sequence Information

Coding Sequence: ATGTGTGATCTCAAAATATGCCGAATATGTCTTCGGACAGAGTGCAAACTTTACAGTTATGACCAATTACCATTGAAGTTTTATTACGAGGAAATAATGTGTTGTAAAAATAAAGTGAACAACAAATTGCCCCAGTATTTCTGCTACGAATGCGCAACGTTACTTCACAAATTCCATAAATTTAAAGAGAAATGTTTTAGTGGGCAAAATATCTTACACGATCTGCTATTTAGGAATATGttaaacTACAAAGAGGTTAATGCcttaaatagaaaaagaaaatcacaACCTCTTCCTTATCAAATGAACTTGAGCATAATAAAAGTTACTAAACATGTAAAAACGTACAATTACATTTACAAAGGTGAAGAAGAATGGGATGACGAGATTGAAATAGATTTCTCtgataaaacatttaataatgaTCATGATTTAGATGAGAAATCGgaaattgttattgtaaaacataaaaatgaatttaacaaTGTGAAATCTGAAGAAGACATCCGAGTTACTAAAGATACTGATCATATGCCAGAAGAGAATAAACCTGTTTTAGACAATGATGATTATGATGACAATGAACCGTTTTTTGATGATTTCCCTACTATTAATGATTCAAAATGTATTGATGATGGTAAAATATCAGACAATAATGAAATGACACGTGTACCTAGTCCCATTTCGTCTGATGATGAAGTTTTAGCGAAAATAGTTAACAAATCTAATGACACAAAATTAGTAACAAATACAAAAGTGCCAAAATTTCAAAGATCAAAGAAAGGTACACCGAAATTGAGTGATGGGAAttggaagaaaataaatttgacaGATGAAGAGGCCATGCAGAGGTTTGTGGCGAGAGCTGAAGATAGTAAATATGTGAACGCACCCTATAAATGTGAACAATGTTATAAATGGTTTTCAAATGTTGATATATACAATAGACATATTACTTTGAGGCATGATCAGtCTCTACGTCTGGAGTGTAAATTTTGCAAAATGCGTTTCAAATTGGGCCATCAACTACAGAAACATTTGAAACAGCATTACAACGTTTACGAATGCCAGCGGTGTTACTTCGTCTGTCTTTTagaacAATCGGCAATATTTCACGACGAGTCTCATAACGGCAAAATAAGAACATGCAACGTTTGTTTTAAGGAATTCACTCACTCGTCAACATACTACTCGCACATGACCACGCACCGCACGAACTTCTTGTGCACTATATGCGGCCGGTCGTTCGTCAGCGTTCTCGGTTTGGACGTTCACAAGAAACGGACGCACATAAACTACAGGGACGCGgAAAACACTGTTAAGCCAGACACAGAAACTATGTACTGCGAGCGGTGTGACATCAAGTTTGCGGCGCGGGCCGCTTACGAGGAACATTTGTTCCATTCCGCTAACCATACGGAAGATATCGTAGATGCTAACAATGAACTACAAAGATTCCAGAGGAAAGTTTGTGGGATCAAGGAAAAGGCAGTGTTAGCGGAAGAAATTCGAATCAGGAAAGAAAAAGATCCAACGCTTGTGTTGTCCAAACCGGTGAAAAGGTGGTGCGTCAGGACGCCGAAGAAAACTCCAATGAATTGTTatcaaTGCGGCAAACATTTCGAATCTCAAATGCAGTGTAGGAAACATCATTTAAAGGAACATCCACGGACCACCTTCGTGTACCCGGGGACGCCCGAGAGGACGATATGTGAGATCTGTGGCGCCGACTTAGCGTTTGGCAGCGTGATGGCTCACCTCAACATGCATTCAAGAGAGAAATTATACAAGTGTGACGTTTGCGAAAGAAGTTTCGTGCAAAATGCAACTCTAAAGAGGCATATGTTGGTCCATACTGGCGAGAGGCCGTTCCCTTGCACCATGTGCGAAAAGAGGTTCACACAAGCGGCCAGCCAAGCATTGCACATTCGCACTGTTCATTTGAAGCAACCGCATCCTAAAaggaatagaagAAAGAAAACGGAGTTTCATTTTGAAGAAGATCGCACGTCTGAATGA
Protein Sequence: MCDLKICRICLRTECKLYSYDQLPLKFYYEEIMCCKNKVNNKLPQYFCYECATLLHKFHKFKEKCFSGQNILHDLLFRNMLNYKEVNALNRKRKSQPLPYQMNLSIIKVTKHVKTYNYIYKGEEEWDDEIEIDFSDKTFNNDHDLDEKSEIVIVKHKNEFNNVKSEEDIRVTKDTDHMPEENKPVLDNDDYDDNEPFFDDFPTINDSKCIDDGKISDNNEMTRVPSPISSDDEVLAKIVNKSNDTKLVTNTKVPKFQRSKKGTPKLSDGNWKKINLTDEEAMQRFVARAEDSKYVNAPYKCEQCYKWFSNVDIYNRHITLRHDQSLRLECKFCKMRFKLGHQLQKHLKQHYNVYECQRCYFVCLLEQSAIFHDESHNGKIRTCNVCFKEFTHSSTYYSHMTTHRTNFLCTICGRSFVSVLGLDVHKKRTHINYRDAENTVKPDTETMYCERCDIKFAARAAYEEHLFHSANHTEDIVDANNELQRFQRKVCGIKEKAVLAEEIRIRKEKDPTLVLSKPVKRWCVRTPKKTPMNCYQCGKHFESQMQCRKHHLKEHPRTTFVYPGTPERTICEICGADLAFGSVMAHLNMHSREKLYKCDVCERSFVQNATLKRHMLVHTGERPFPCTMCEKRFTQAASQALHIRTVHLKQPHPKRNRRKKTEFHFEEDRTSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -