Basic Information

Insect: Amyelois transitella
Gene Symbol: SCRT1
Assembly: GCA_032362555.1
Location: CM063575.1:527031-541929[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00068 0.045 14.8 1.4 1 23 275 297 275 297 0.99

2 10 0.018 1.2 10.4 6.0 2 23 305 326 304 326 0.97

3 10 1.5 97 4.3 6.2 1 23 360 383 360 383 0.97

4 10 1.3e-06 8.7e-05 23.4 3.1 3 23 389 409 387 409 0.96

5 10 0.002 0.13 13.3 1.8 1 23 415 437 415 437 0.97

6 10 0.0042 0.28 12.3 2.6 2 21 444 463 443 468 0.93

7 10 0.00037 0.025 15.7 0.6 1 23 476 499 476 499 0.89

8 10 0.14 9.3 7.5 2.1 3 23 507 530 506 530 0.92

9 10 0.00031 0.021 15.9 3.4 1 23 539 561 539 561 0.97

10 10 1.4 91 4.4 0.4 1 23 567 590 567 590 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00068	0.045	14.8	1.4	1	23	275	297	275	297	0.99
2	10	0.018	1.2	10.4	6.0	2	23	305	326	304	326	0.97
3	10	1.5	97	4.3	6.2	1	23	360	383	360	383	0.97
4	10	1.3e-06	8.7e-05	23.4	3.1	3	23	389	409	387	409	0.96
5	10	0.002	0.13	13.3	1.8	1	23	415	437	415	437	0.97
6	10	0.0042	0.28	12.3	2.6	2	21	444	463	443	468	0.93
7	10	0.00037	0.025	15.7	0.6	1	23	476	499	476	499	0.89
8	10	0.14	9.3	7.5	2.1	3	23	507	530	506	530	0.92
9	10	0.00031	0.021	15.9	3.4	1	23	539	561	539	561	0.97
10	10	1.4	91	4.4	0.4	1	23	567	590	567	590	0.91

Sequence Information

Coding Sequence: aTGGAAACCGTCAGCTCAGTTTCTTTGGGTAGCATCTGTGAAGGCTGTTTGAGTGTTGATCGAAAACTAACGCCAATTATCGGAGAAGAAAGTGATGGCTTCCACTGGATTTTAGAATCTCtcGATCATGTGAGCCACACAATATTATTGTGCTGGGAGTGTGCTGCTATGTTGAGGAGAACATTGAGGTTTAGGGAACAAGTAAAGAATGCTCGAGACAGTCTTGTCCGGTATATgctACATCAGACTATCTTAACTTCTCTTTCATGTCTAGGCATGACTAAAAATGACATCACACTTAACATAATATACAATCCTGAACAGCTGGTATCTCATACAGAAGAGAGCAAAGCAGTAAAATATAGTGTTAAAGAAAAAAGGAGAAATACACAGAAGAATGTACAGACGAACAATGATCATACTACAGAACCAGTTGCATTCATAAAAATAGAGGAGAAAAatgattatgatgatgatatatttGATGACCCGGTGACCGGAGAAGCGGTCAACGATAAGGATGTAAAGgcTGTATTAAAATCAGACTCTGACCACGTGCCAGTGAAACGGAGAAAGAGACGGAAAACAAAAGAGTATAGTTTCGACGAATCCGACGATGAACCGTTGAAGAAGAAGGCAGAAGGAAAGAGAGGTATATCAAAAGAGCGGCCGGCGGGCGTGGTGGAGAACGCTCGCGTGTCGCGAATGCTGAGTCAGCTCAACGTACGCCCGGGGCAGTTGGAGATGGTGCTGCTCAGCTGGGAGCAGataGAAGAGGAGAGGAAGAAGGCCTTGTCCAGCGAGAAGTTCACCCGGCACGAGTTCCGCTGCGACGACTGCGCGCTCGGCTTCAACCACCGCGTCAAGCTGGACGACCACATGCGGAGGCACGACccggcaAACGGCACTATAAGCTGTTCGGTGTGCAACATCCGTTGTAAGGACGCGCATGCGCTGTGCTCGCATCGGAGGAGGCATCGAGTTAGGTGGCGCTGCTGCAGCTGCGGAGCCTTGTTCTCGCGCGCGGGCGTGGCGGCGGACcacgcggcgcgcgcgcacgccgcgccgccgcccgacCACCGCTGCCGCGTCTGCCACCACGTGGAGACaaCACTAGGAAAACTCCGCATCCACATGAAAAAAACCCACTCGGAACGACAGAACTGCGAGCATTGCGGGAAAAGTTTCAGGGACAAAAGCTCGCTGAAGACACATCtgttcatACACCGAGGGGAGAAAGATTACGCGTGTACTCACTGCGACAAGAAGTTCCTCTTCAAGAAGGCGTTAGAAGTGCATCTGGTGACGCACGACGCGCCGCAACACCTGTATTGTCATCAGTGCGACGTGAACTTCAAGAATCAGATGTCTTACTACCAGCACATGCGATACAATCTGAAACACATAGACCCGGCGAACTTGAAACACGCGTGCACGATATGCGGCAAACGTTTCGCGAAGTCGTCGCGGCTCAGCGAGCACCGCGACGCCGTGCACCTGAAGCGCACGCCCGTCGCGTGCGACCAGCCGCACTGCACGTTTTCGTGTTCGTCTCGGCCGGTTCTGCGCACTCACCTCCGAATGGTGCACAGAAACGGTCGCTCTGTGAGGAACCACGTGTGTCATACATGTGGGAAGTCCTATACGACGAAGAAGATTCTGGAAGGCCACATCCGCAGCCACACGGGCGAGAGGCCGTTCTGCTGCGCTCTGTGCCCGGCCACCTTCGGCTACGACGCCGCGCTCTACAACCACAACAAACTGGTGCATCTTAAACAGTCTACCCGCAACCGCGCCGTTCCTGCCACGGAGCCTTGGGCCCCAACAGATGCCCCGCGTCAACAGGAGAATATGGAAAGTGACGTCACGTGA
Protein Sequence: METVSSVSLGSICEGCLSVDRKLTPIIGEESDGFHWILESLDHVSHTILLCWECAAMLRRTLRFREQVKNARDSLVRYMLHQTILTSLSCLGMTKNDITLNIIYNPEQLVSHTEESKAVKYSVKEKRRNTQKNVQTNNDHTTEPVAFIKIEEKNDYDDDIFDDPVTGEAVNDKDVKAVLKSDSDHVPVKRRKRRKTKEYSFDESDDEPLKKKAEGKRGISKERPAGVVENARVSRMLSQLNVRPGQLEMVLLSWEQIEEERKKALSSEKFTRHEFRCDDCALGFNHRVKLDDHMRRHDPANGTISCSVCNIRCKDAHALCSHRRRHRVRWRCCSCGALFSRAGVAADHAARAHAAPPPDHRCRVCHHVETTLGKLRIHMKKTHSERQNCEHCGKSFRDKSSLKTHLFIHRGEKDYACTHCDKKFLFKKALEVHLVTHDAPQHLYCHQCDVNFKNQMSYYQHMRYNLKHIDPANLKHACTICGKRFAKSSRLSEHRDAVHLKRTPVACDQPHCTFSCSSRPVLRTHLRMVHRNGRSVRNHVCHTCGKSYTTKKILEGHIRSHTGERPFCCALCPATFGYDAALYNHNKLVHLKQSTRNRAVPATEPWAPTDAPRQQENMESDVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -