Atra019700.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063576.1:3863997-3891383[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 1.1 10.4 0.0 1 23 524 547 524 547 0.95 2 13 6.5 4.3e+02 2.3 1.8 1 21 662 682 662 683 0.90 3 13 0.0064 0.43 11.7 1.2 2 23 739 760 738 760 0.95 4 13 0.046 3.1 9.0 1.2 1 23 771 795 771 795 0.91 5 13 8.7e-05 0.0058 17.6 0.3 2 23 802 825 801 825 0.96 6 13 0.08 5.3 8.3 0.2 1 23 831 853 831 853 0.93 7 13 0.0025 0.17 13.0 3.3 1 23 859 881 859 881 0.98 8 13 0.071 4.7 8.5 0.0 2 19 892 909 891 912 0.90 9 13 0.092 6.1 8.1 0.1 1 23 989 1011 989 1011 0.98 10 13 2.9 2e+02 3.4 7.4 1 23 1018 1040 1018 1040 0.95 11 13 0.0016 0.11 13.7 1.8 1 23 1081 1104 1081 1104 0.95 12 13 0.00075 0.05 14.7 2.1 1 23 1111 1134 1111 1134 0.98 13 13 0.00016 0.011 16.8 1.7 2 23 1169 1191 1168 1191 0.95
Sequence Information
- Coding Sequence
- ATGGAGGACTTGCAACCAATCCCATTGATATTGTGCATGGAAAATGCTGCTGGAGAAGAGATATCTCTCAGGATTGAACCGGAAGATGACTTCCAGACATTTCTGGAGAAGGCCAAATCTGTGCTAGGATTCGATGTGGACATAAACTCCATAACACGTAACCAACCCGTTTCACTAGACGACAATATCTACCAATTTCTTATCAACTCCGACCAGACTTACGAAACGGACTTGAACGCGCAGAATTACGACCAAATACTAGACCAGGCGGGCGAAAACGACGATTTAGTTTATGTTTTAGATGACGGAACGCAAATTAGGGCTTCGCAAATCCATTTCGATAATGAAGACCCGCCGGTTGATCTGACATCTGAAAAAATACCGTTTGTCAAATATGCTGATGCTGAACCAGATGAGTTAGATGTAGAAGTCAGTGGCGATGTTGATattaaaaactacaatataGTCGAAAGTCCAGTGTCCCGATGGTCTAGTAAAAACTCCAGTCCTAAATTCAGTTTTATCAATAACTTACCTTTTAAACTAGTTTGCAATAACACCTCTGGGTTCGAAGCACAGTTCACGAAATATCTAGAATCATCTGCTGCGCCGAAAACGTATGCGACTTTGAATCCAGTCGTAAGTAGAAATAAGTCTCCAAGAAGTcttattaatgataattttaagaattacaatgaaaattttaatagaaccGATGATTTTACTGCTTTTACTCGGGAGGAGATCCTTAATATGTTTAAAGATTCCCCGGTCGCGTCATTGCCTTACAAAAACCCGGTTTTGGAGAAGAGGCGACACGTACGCAAATCTGATCCTTCGAGGGTTCATAAATCATGGACAACTAGATCAAATTACGATGACGGCGTTTTGATCGTAGACAGTGAAAGTAAAGATTGTTTCATTTGCGGTAAATACGTTGAGAACAATCTAGAAAAGTTGTATTTGTTTGACAATGAAGACCAGAAGATACACAGAGCGTCGCCACAGAAGAAAATGTCCAGGCAATTGAAGATAATTTGTGAAACTTGTTTGGGGGAAAATTTCAGGCCTTGCAGAATGAAAGGACCCAACCAGTGTTTGAACTCTGACGAGTATTTAGTTATAAGGAACAACCAGCAGTATATATTTCAGAAGTTTACTGATCTGTCGTTAAAGAAAGAGTTTAGCAAAGATATTACAGACGATGTCGAAGCGAAAAACAAGAAGATTGAAAAAGATGAGTTTGTTAAAGTCGAAATAGGATCTGACGGTGAAATTGTTACAAAATCATTGGATAACAGCCCTGATTATTGCGAGGAtgtgattttaattaaagacGATCCAAGTTCGAGTGAACCGGAAATCGTGGAGCCGCAGGAAATAGATGACGCCATAGACAATTTGGACGATGCGGATGACGAAGTGAAAGAGTTTCTTGGGACGTATAATTGCGATAACAATGAAACGAATGAGTTGAAATGCCGatTTTGCGACATTATCTTTCCTGCTATTCCGGAAGTGATGGAACACTGTGAGATTCATAAGCATGATATTGAGGACGGCGTGGTGTATCCGTGTCCTCTTTGCAATTACGGTTACGCCAATGTGAAATGGCTGAAAGGGCATTTGAAGGCGGCACACGAAAAACCCGAGAGAGATTCACAGAATAAGGAGAATCCTACTGAAATTGATAAAGAAGAATCTAAGTCACCGGCCCCTGGATCCCCAATAGCAAAGCGTACACGCAGTtccataaaaaaatctgatgGGGAAGAGAAAGataCCCCAGAGCAAGCGAATAAGGAAAAAGCTGAAACTGATGAAAAGAAAGGGACAACGATAGAAGTGGAAGTGAAACAAGAGAGTGTGATGAGCAGTGATGATGAAATATGGATCGTTCACACCGGCGAGGAACAGTTGGAGAATATTCTTCAATCCAAACAGagtgaaaaagaaaaagacacaATGTCCTACAAGAAAACACACAAGTGTATTAATTGCAGTCAAATCTTCACATCGGCTGAAGCGTTCGCGTCCCACAAATGTCGGAAACGAGGCAGGAAGGTCAGTGAGGATGTTGTCAACAAGAAAGACGTTGTTAAGAGACCTCCAGGAAGACCGAGATTGACTGAAAGAAAGCCTAACAACGATTCTCTGATTGAGAAACACCGTAAGAGAAAAAACAAGGCGCCCTCTTCGGACCCTCAGATAGTGACGTGCGACGATTGCAACGAATCCTTCACGTCAAAAGTGCGTCTCAAATTCCACATGCAATTCCACGAGACGCCCAGCCTGCTGACAGACGGTCGGTACTCGTGCACTGAATGCGATGGAATCTCATTCTCTACTGAAAGCGAACTCTTTGATCACGTACATTTCAAACACGACAAGCAGAAGAGATGGCAGTGCCCTGTAGAAGACTGTGGGAAGACTTTTTATTTGAGGGCGACGCTGACGAAGCACAGCCGAAGCCACACGGACACGCGGCGTTACGTGTGCGTCACGTGCGGGAAGCGCTTCCTGGACAAGCAGACGCTGGACGAGCACGGGGTCACCCACTTGCAGATCAAGCCATTCCAATGTCACATCTGCCTGAAGCAACTCACTCGTCGTTCTCGCCTCCGCATGCACCTTCGAGCTCACGAGGAGGCGTTAACACCAAAATTGGTGCTGGTCTGCGGAGTTTGCAATAGAGCCTTCAGGGACCAGACTGATGCCCAGGAGCACGCAACAAAATCAACGGCATGTATAGAGAAGTTCGCGAGCGAATTGAAAGAGGAAGGCGAGGAGACCCAGTTATCACCCACCAGTGGGTTGGTGAGGAAAACTGTACAAGTTGTGGattcTCCAAAACTGTTGAAGCCTATAAAACGTCAAGTGGACGACGCGACGGCGGAACCTCTGCTATCCAAGATGGCGGACGAGGCAAGGGCCATCATAAGGGTGGTGGAGATCGAGAAGGCATTCCGATGCGAGTATTGTGAAGACGTTTTTTATCTGGAAGATGGTTTGAACGACCACCGGCTGATACACAAGGGGGTCAAGAACCCTTTCACATGTCACATTTGTAAAGTCACGTTTGCGACATATTCaagATGTACAACGCACAAAACGACTCACGGCTTCTACAAGCGCCCTCTAGCGGACATGAAGAAGCAACTGGAGGCTAATGTCAAACTTGACGCGGGGCCGAGCGCCACGGGAATATTGGGCTACGGCGGCTTTCCCGTGGTCAAACATTTCTTGTGCGAGgATTGTGGACGCTCGTACCTACATTGGACCTATCTCCAAGTGCACCGTCGTATGAAACATGCCAATgataattttctttacaaatgCAACCAGTGTGAACTCACTTTTCCGCAcagTTGGAGTCTAGCCTATCATAGAAAGAAAATACACTGCAAGGTAATTGAAGAGGGTAGTGGTTCTTCTAAACCACCGAAAGACGATTATAGgTCGACCGTCATGCGTAACCATCGCGCCGGCGGTCTCCCGGCGTGGTCTTGTTCGAGGTGCCCGAAGAGATTTCGATCTCGTAACGATTTGAGAACGCACGTTAGATTGAAGCATCCATCTTATTTAGCTGTTATTGAGATACCGGGTCTCAACCCCACCCCTGAAGATGTGATGAGAGTGTTACGTCTGAATGGCATTCAGCACGAACGGATTATTGAAATCACCAAAATGTCTTTCGCAAAGCTCCCTCTGTTGGCGGAAGGAGATCGCACGCTCAGAATGGAACTGGAAGAGGCTACTATGTTACAATAA
- Protein Sequence
- MEDLQPIPLILCMENAAGEEISLRIEPEDDFQTFLEKAKSVLGFDVDINSITRNQPVSLDDNIYQFLINSDQTYETDLNAQNYDQILDQAGENDDLVYVLDDGTQIRASQIHFDNEDPPVDLTSEKIPFVKYADAEPDELDVEVSGDVDIKNYNIVESPVSRWSSKNSSPKFSFINNLPFKLVCNNTSGFEAQFTKYLESSAAPKTYATLNPVVSRNKSPRSLINDNFKNYNENFNRTDDFTAFTREEILNMFKDSPVASLPYKNPVLEKRRHVRKSDPSRVHKSWTTRSNYDDGVLIVDSESKDCFICGKYVENNLEKLYLFDNEDQKIHRASPQKKMSRQLKIICETCLGENFRPCRMKGPNQCLNSDEYLVIRNNQQYIFQKFTDLSLKKEFSKDITDDVEAKNKKIEKDEFVKVEIGSDGEIVTKSLDNSPDYCEDVILIKDDPSSSEPEIVEPQEIDDAIDNLDDADDEVKEFLGTYNCDNNETNELKCRFCDIIFPAIPEVMEHCEIHKHDIEDGVVYPCPLCNYGYANVKWLKGHLKAAHEKPERDSQNKENPTEIDKEESKSPAPGSPIAKRTRSSIKKSDGEEKDTPEQANKEKAETDEKKGTTIEVEVKQESVMSSDDEIWIVHTGEEQLENILQSKQSEKEKDTMSYKKTHKCINCSQIFTSAEAFASHKCRKRGRKVSEDVVNKKDVVKRPPGRPRLTERKPNNDSLIEKHRKRKNKAPSSDPQIVTCDDCNESFTSKVRLKFHMQFHETPSLLTDGRYSCTECDGISFSTESELFDHVHFKHDKQKRWQCPVEDCGKTFYLRATLTKHSRSHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALTPKLVLVCGVCNRAFRDQTDAQEHATKSTACIEKFASELKEEGEETQLSPTSGLVRKTVQVVDSPKLLKPIKRQVDDATAEPLLSKMADEARAIIRVVEIEKAFRCEYCEDVFYLEDGLNDHRLIHKGVKNPFTCHICKVTFATYSRCTTHKTTHGFYKRPLADMKKQLEANVKLDAGPSATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDNFLYKCNQCELTFPHSWSLAYHRKKIHCKVIEEGSGSSKPPKDDYRSTVMRNHRAGGLPAWSCSRCPKRFRSRNDLRTHVRLKHPSYLAVIEIPGLNPTPEDVMRVLRLNGIQHERIIEITKMSFAKLPLLAEGDRTLRMELEEATMLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013586;
- 90% Identity
- -
- 80% Identity
- -