Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063578.1:2307238-2308287[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.7e-05 0.0051 17.8 1.8 1 23 28 51 28 51 0.97

2 10 0.2 14 7.0 0.1 2 23 78 100 77 100 0.94

3 10 5.6 3.7e+02 2.5 3.9 2 23 123 144 122 144 0.92

4 10 0.012 0.78 10.9 1.2 1 21 148 168 148 170 0.93

5 10 7.5 5e+02 2.1 3.8 3 23 179 200 177 200 0.92

6 10 0.0013 0.084 14.0 1.1 1 23 207 230 207 230 0.88

7 10 0.00041 0.028 15.5 0.4 2 23 238 260 238 260 0.95

8 10 0.00032 0.021 15.8 1.0 1 23 266 288 266 288 0.98

9 10 9.4e-07 6.3e-05 23.8 2.4 1 23 294 316 294 316 0.99

10 10 0.00013 0.0086 17.1 5.4 1 23 322 345 322 345 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.7e-05	0.0051	17.8	1.8	1	23	28	51	28	51	0.97
2	10	0.2	14	7.0	0.1	2	23	78	100	77	100	0.94
3	10	5.6	3.7e+02	2.5	3.9	2	23	123	144	122	144	0.92
4	10	0.012	0.78	10.9	1.2	1	21	148	168	148	170	0.93
5	10	7.5	5e+02	2.1	3.8	3	23	179	200	177	200	0.92
6	10	0.0013	0.084	14.0	1.1	1	23	207	230	207	230	0.88
7	10	0.00041	0.028	15.5	0.4	2	23	238	260	238	260	0.95
8	10	0.00032	0.021	15.8	1.0	1	23	266	288	266	288	0.98
9	10	9.4e-07	6.3e-05	23.8	2.4	1	23	294	316	294	316	0.99
10	10	0.00013	0.0086	17.1	5.4	1	23	322	345	322	345	0.98

Sequence Information

Coding Sequence: ATgcgtaaacaaaaaaacaatgttacacAAATATTACTCAATTCTAATGCAACACCTATATTTAACAGCACCGGTCTTGGATACACTTGTAGTTATTGTAGGGAAAATTATATGAATCCAAGTGatctaaaaaaacatacattgaaGACGCATAATGATGTTGAGAAATCTAAACTGGTAGAGAAGGACAATtggaataaattttatgttaaaatggATATAACAGACCTGCAATGTACCATATGTGACTCTGCAGTCGATGATATAGAGTCGCTTTTGGAACATCTCCATTCAGATCATGACATTAAAATCCATACGGATATCAAAAATCATTGCCTCCCATTAAAATTCGAGGGTGATGAACTGAAATGTCACAAATGTTCCAGTGTTTTCCATGCATTCAAAATTTTACTTGAACACATGAATACTCACTGCAGAAATTATATATGCGACGTGTGTGATGCGGGATTTATAAATCAAAGGAAGTTAGTAAGCCATAAAAAGTGTCACGAGTTAGGAAGCGGCAGCTTAGATTGCGAAGTATGCTGCAAAAGTTTTGACACGTTACACAAGAAGAATATGCATGTAAAGCAGGTGCatgtacttttaaatttatgccATAAGTGTAATATTTGTGATAAAAAGTTCACGACTATGATAAGCAAAGATAATCATATGGCTGCTGTTCATGGCGTGATAAAGAATAAAGCGAAATGCGTGGCTTGTGACAAGGAGTTTGCTAATACGAGGAGTTTGAGGGTACATATAAAAAGGGATCATTTATTGGAGCGGAATTACCAATGTCCCGATTGCGAAAGCAATTTTTTCACTAAAACTGAATTATCTGATCACACACTCAAGCACAGTAAGGAAAAGAATTTTAAGTGTGATGTATGCTTAAAGCGCTTTGGAAGGAAGTTTAATTTGAAGCAACATATGAGGATCCACACGAGTAATAAAAGATTCAAATGCGAGTACTGTGATCAGAAGTTCGCGTACCAGTGCACTTTAAAAAGTCACTTGAAATCGAAGCACAATGATTTACTTTAG
Protein Sequence: MRKQKNNVTQILLNSNATPIFNSTGLGYTCSYCRENYMNPSDLKKHTLKTHNDVEKSKLVEKDNWNKFYVKMDITDLQCTICDSAVDDIESLLEHLHSDHDIKIHTDIKNHCLPLKFEGDELKCHKCSSVFHAFKILLEHMNTHCRNYICDVCDAGFINQRKLVSHKKCHELGSGSLDCEVCCKSFDTLHKKNMHVKQVHVLLNLCHKCNICDKKFTTMISKDNHMAAVHGVIKNKAKCVACDKEFANTRSLRVHIKRDHLLERNYQCPDCESNFFTKTELSDHTLKHSKEKNFKCDVCLKRFGRKFNLKQHMRIHTSNKRFKCEYCDQKFAYQCTLKSHLKSKHNDLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -