Atra010282.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063561.1:2223175-2230632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.4 1.6e+02 3.6 0.5 2 23 204 225 203 225 0.93 2 9 0.00056 0.038 15.1 1.4 2 23 292 313 292 313 0.96 3 9 0.023 1.5 10.0 0.4 1 20 320 339 320 341 0.89 4 9 2.8e-05 0.0019 19.2 1.6 1 23 348 371 348 371 0.97 5 9 0.0001 0.0068 17.4 2.9 2 22 377 397 376 397 0.94 6 9 0.00025 0.017 16.2 1.2 1 23 404 426 404 426 0.93 7 9 7.6e-06 0.00051 21.0 0.4 2 23 433 454 432 454 0.95 8 9 2.2e-06 0.00015 22.7 0.5 1 23 460 482 460 482 0.97 9 9 2 1.3e+02 3.9 4.9 1 19 488 506 488 511 0.88
Sequence Information
- Coding Sequence
- ATGTCTCTCACTAGAAGTAGGCATGctcatttgaaaataaacacatGTCGCATCTGTCTGGAAGCTAATTTATCAGAcagcattattttaaaatgcggTGATATGTGGTTGGAATTATATGAGTACTGCTTTGGGCTAACGATTGATGAAAATGATGTGCCGAAAATACTTTGTATGGCATGTGCTCAGCACGTGAAGGACTTTTCAAACTTCAAAAGGAAGTGTCATCATTCCAACAAACTGTGGAGGTCTATTATAGCAACTGATGTGAAATGTTACTCGGAAAATTATAAAGCAAAAGTAGATATTGACTTATCTTTGGTAAAACACGAGAATGTTGATTCAACCCAATCTTTATCGGAATCTATTGATATTGACGTGAAGACAGAATATATTTCATCTATCTCTGTAAATAACAATGAGGAAGATTTTATAAGTGGTAATGAATGTGACGGATCTTTAGAATATGATATAGATTatacaactaaaaaaaaagttaagaaaaCACGAAAAAAAGCATcaggtaaaattaaaaaacctaaaaaacaaaatggagtGAAACCTAACAAGCCAGCTAAAAAACTAAATGGAGTGGTTGATACCACCCAACCTTGTTgtTTATGCGACTTTGTTTCTTCTGACACAGAAACCATAAAGGATCATTTGGAGGAGCACAGGATAAAAAATGATCTTGCGTGTAAACTTTGCGACCACAAAGGCAGAGATTTCGCTGATGCCGTCAGTCATAGATTTCACCACATCCCCAGGGCGTGTAGACTGCACATAATCTGTCATATTTGTGACACGAGACAGTTGTCCGTCAAATCGTTACAGTTTCACTATCGTTCCGTACATTTGGACAAAGACGGCGGTGTTTGCCATGTGTGCGGTAAAACGTTTAACAAATACAAAACCTGGTGGGAACACGAACGGTTACACAATGAGAATGTGAAGAAATATATATGCGATCATTGTGGGAAGACGTATCTCTACCGCTCTCAAATCGAGGAACACCTTTCAAATTTGTCCGACGTAAAGGAATTTATATGTGACAGCTGCGGCTGCGCCTTCAAGCGATatagttatttaaaagTGCACATATCGACTGTACACGAAAACTCCGGCGTGAAATGCGACCACTGCGGCAAGACGTTCAAAAACGACTACAGACTGCGACACCATCTCAAAATGTTGACAAGAAAGAAGGAATATTTCTGCAAAGTCTGTTCCAAAGGGTTCGTTCATCCTGGCGCATTAAAAAAACACGAGTTTTGGCACACTGATGAAAGACCGTGCCCTTGTGAAATATGCGGGCAGGCGTTCAAAAAGCCCGGTGAACTTAGAGTGCACTATATGAGGCACAGaggaatatttaaattcaaatgtaaCGTTTGTTCTAAAGCGTTTGTGACCAGTACGCAGTTGAAACGTCACGCGGCCGTACATACGGGCGTGCGCAGCCACAGATGTACGGCGTGTGATAGAAGCTTTCATGGCAGGAAATTGCTCGTCGCACATTGTTTGAGCAAACATAATATTGTATTGGATTTTAGCAaggaaaatgttaataatattgagtaa
- Protein Sequence
- MSLTRSRHAHLKINTCRICLEANLSDSIILKCGDMWLELYEYCFGLTIDENDVPKILCMACAQHVKDFSNFKRKCHHSNKLWRSIIATDVKCYSENYKAKVDIDLSLVKHENVDSTQSLSESIDIDVKTEYISSISVNNNEEDFISGNECDGSLEYDIDYTTKKKVKKTRKKASGKIKKPKKQNGVKPNKPAKKLNGVVDTTQPCCLCDFVSSDTETIKDHLEEHRIKNDLACKLCDHKGRDFADAVSHRFHHIPRACRLHIICHICDTRQLSVKSLQFHYRSVHLDKDGGVCHVCGKTFNKYKTWWEHERLHNENVKKYICDHCGKTYLYRSQIEEHLSNLSDVKEFICDSCGCAFKRYSYLKVHISTVHENSGVKCDHCGKTFKNDYRLRHHLKMLTRKKEYFCKVCSKGFVHPGALKKHEFWHTDERPCPCEICGQAFKKPGELRVHYMRHRGIFKFKCNVCSKAFVTSTQLKRHAAVHTGVRSHRCTACDRSFHGRKLLVAHCLSKHNIVLDFSKENVNNIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -