Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063575.1:5601073-5610409[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0012 0.078 14.1 3.0 2 23 252 274 251 274 0.96

2 14 0.014 0.92 10.7 4.6 1 23 281 303 281 303 0.98

3 14 5.9 3.9e+02 2.4 5.1 1 23 307 329 307 329 0.94

4 14 0.0035 0.24 12.6 0.7 1 23 334 357 334 357 0.96

5 14 0.14 9.6 7.5 0.1 3 23 364 385 364 385 0.95

6 14 0.0076 0.51 11.5 2.9 1 20 393 412 393 414 0.95

7 14 0.18 12 7.2 0.5 3 23 422 443 420 443 0.93

8 14 0.028 1.9 9.7 0.2 3 19 453 469 451 471 0.94

9 14 1.9 1.3e+02 4.0 0.0 2 23 478 500 478 500 0.87

10 14 0.0027 0.18 12.9 3.7 1 19 505 523 505 528 0.91

11 14 0.9 60 5.0 0.1 2 11 594 603 594 608 0.85

12 14 2e-06 0.00013 22.8 1.7 1 23 640 662 640 662 0.98

13 14 2.7e-05 0.0018 19.2 0.7 1 23 668 690 668 690 0.98

14 14 0.00021 0.014 16.4 3.3 1 23 696 719 696 719 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0012	0.078	14.1	3.0	2	23	252	274	251	274	0.96
2	14	0.014	0.92	10.7	4.6	1	23	281	303	281	303	0.98
3	14	5.9	3.9e+02	2.4	5.1	1	23	307	329	307	329	0.94
4	14	0.0035	0.24	12.6	0.7	1	23	334	357	334	357	0.96
5	14	0.14	9.6	7.5	0.1	3	23	364	385	364	385	0.95
6	14	0.0076	0.51	11.5	2.9	1	20	393	412	393	414	0.95
7	14	0.18	12	7.2	0.5	3	23	422	443	420	443	0.93
8	14	0.028	1.9	9.7	0.2	3	19	453	469	451	471	0.94
9	14	1.9	1.3e+02	4.0	0.0	2	23	478	500	478	500	0.87
10	14	0.0027	0.18	12.9	3.7	1	19	505	523	505	528	0.91
11	14	0.9	60	5.0	0.1	2	11	594	603	594	608	0.85
12	14	2e-06	0.00013	22.8	1.7	1	23	640	662	640	662	0.98
13	14	2.7e-05	0.0018	19.2	0.7	1	23	668	690	668	690	0.98
14	14	0.00021	0.014	16.4	3.3	1	23	696	719	696	719	0.97

Sequence Information

Coding Sequence: ATGTGGTCAGTGCTGGTGGTGCCTGACGAGGTGAAGGAGGACGGTGACCTGACTGCGTGTATCGGATGTCTGGCCACGGAGGGCAAGCTGTACGACATATATGCTAACAATCTGGTTGAGAGCTTTATACAGTTGGTTGGGATTTctGAGATTGAGAGCCACTCCCCGCGCCACCTGTGCGCGTTCTGCCTGTCGTCGCTGCGGCGCGGCGCCGCCTTCCGCCGCTCGTGcgcccgcgcacgcgccgcgCTGCAGCTCGCCGCGCCGATCACAACAAGTTACCTCAATGAAGTCAATAAGAAACTAAAACATCCGTACGCACGGACACCCGTCAAGACTCTAGACGTGACGGCGACAGACCAGCCGGAGATTAAACAGGAGGAGTATTTCTCAGACTCCGACGATTACTTCCTCATCACTATTGGTAATTCAAACAGATTGAAGAAGGACCAAGATTCCGTTAAAAATGATTCAGCAGCAGAAGAGAAGGAAGACGTGCCGTCGGGGAGGGACAGTGACAGCGAAGTTGAAACGTTGCCAATTTTCGCTGACAGCGTAAAAAAagaagtgaaaaataaaaagagagttaacataaaaaaagaaaggaaacCTAAAAAGTGTAAGAGCGACGAGGAAATAGTGAGGAATGTGAACGCTTTCAATTTCGATGTAGTTTTCTTGTCCAAAGACGATCAAATTCGGGAGCAGAATGATTTGAAGACGAGGAAGATCAAATATCTGAGGAACGACAAGAGATGCGAGCTCTGTGGCAAAAATTTCAAGACCAAACGGTCGAGAGAGGTGCATTACAAGAAGTACCACGACGAGACCGTCGGCGCGTTCTCGTGCGAGATATGCCACTGCCGGTTCCCCGCCAAGAACAGGCTGAACTCTCACATGAAGCTGCACAGGGAGCGGTTCCACTGCAGGAACTGCGACTTCGTCACGAACAGGGAGTGCGGCCTGCGTCTGCATTACGAGTTCCACCAGGGCAAGAAGTATATATGCGAGTTTTGCAAAAAAGACTTTGCAAAAGTGTCCAGCTACATGTCCCACGTGAGATTGCTGCACGCCAACTTGCTGCCGTGGTGCGAACTGTGCGGGGAGTCGTTCATCGGCGAGAAGGGCGTTCAGGCTCACAAGAGCAGGGCGCACAAGGACGTGGAAGAGCCAAGTTTTAAGTGTAAAAAGTGCAAAATGTGTTTCATGACGGAGCAAGCTTTGGAGAAGCACAAAAGTTTGAACAAGTGCGATTTGTCCAACTGTGTGCATTGTGGGGACGCGTTCGCCAGTCTGCAGCTGTTGAAATATCACCTGATCCAGCGGCACGGGGTCGAAGGGCCGGCCGTGACGGACTGTGGTCAGTGCGGGGTGAGCTTCCACAGCAGCGCGGCGTTCCAGAGACACGCGAGTGCGTGCGGGGCGGGCGCCGTGTGCGTGCAGTGCGGGCGGGACTTCGACGGCGAGGCGGCTCTCGGCGAGCACGAGGCGCGGGAGCACACCGCGTTCTTCTTCAAGTGTGAAGAGTGTTCCCGCACGTTCACGAACGCGTACTACTTCCGCGACCACTGCGCGCGCGGGCACGAGCGCGCGCGCCGCGACCCCGCGCGGGACGACAAAGACAAACCGCCGGCGCCGCGCAGACGCGGGCGGCGCCCCAACCCGCACGCGGAGCCCCTCGTGCGGAAGTGGAGGGTGGTCGCCGGGGAGCGGAGGCTCGTCATGGAGAAGCTGTCCTCCGACGGACAGGTCATTAAAGAAGAGCGGGTCAGGGACGCTGTGTGCGAATTGTGCGGGAAGGCTTTTGCGGTGAGTGTCGGTTTTGTTTTTGGTGTAATTTCGTTTGACATAATTTCGtttgaacgTGTCCTCCTCCTCCTGAAGCTGCACCAGCGACTCCACACCGGAGAGAAGCTGTTCTCGTGCTCGTTCTGCGGCAAGAAGTTCAACGTGTCCACGCTGCTCAGGAACCACATGCGCGTGCACACGGGCGAGCGGCCGTTCAAATGCTCGGATTGCCCGAAAGCGTTCAAGGAGTACGCCGGCTACAAGAGGCATTTGCTGAGCCACACGGGCGTCCGCAAGCACGTGTGCGAGATTTGCCAGAAGACGTTCATGACGTCGACGTGCGTGAAGGTGCACATCCGCACCGTGCACATGAAGATCCCCATGCCGCCGCGCGTGCGCAGGCCCCGCGTCAAGCACGAGTGA
Protein Sequence: MWSVLVVPDEVKEDGDLTACIGCLATEGKLYDIYANNLVESFIQLVGISEIESHSPRHLCAFCLSSLRRGAAFRRSCARARAALQLAAPITTSYLNEVNKKLKHPYARTPVKTLDVTATDQPEIKQEEYFSDSDDYFLITIGNSNRLKKDQDSVKNDSAAEEKEDVPSGRDSDSEVETLPIFADSVKKEVKNKKRVNIKKERKPKKCKSDEEIVRNVNAFNFDVVFLSKDDQIREQNDLKTRKIKYLRNDKRCELCGKNFKTKRSREVHYKKYHDETVGAFSCEICHCRFPAKNRLNSHMKLHRERFHCRNCDFVTNRECGLRLHYEFHQGKKYICEFCKKDFAKVSSYMSHVRLLHANLLPWCELCGESFIGEKGVQAHKSRAHKDVEEPSFKCKKCKMCFMTEQALEKHKSLNKCDLSNCVHCGDAFASLQLLKYHLIQRHGVEGPAVTDCGQCGVSFHSSAAFQRHASACGAGAVCVQCGRDFDGEAALGEHEAREHTAFFFKCEECSRTFTNAYYFRDHCARGHERARRDPARDDKDKPPAPRRRGRRPNPHAEPLVRKWRVVAGERRLVMEKLSSDGQVIKEERVRDAVCELCGKAFAVSVGFVFGVISFDIISFERVLLLLKLHQRLHTGEKLFSCSFCGKKFNVSTLLRNHMRVHTGERPFKCSDCPKAFKEYAGYKRHLLSHTGVRKHVCEICQKTFMTSTCVKVHIRTVHMKIPMPPRVRRPRVKHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -