Atra017538.2
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063572.1:1375289-1386808[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00052 0.035 15.2 0.9 1 23 240 262 240 262 0.98 2 11 0.0052 0.35 12.0 0.8 1 23 269 291 269 291 0.98 3 11 0.63 42 5.5 0.6 1 12 325 336 325 337 0.90 4 11 0.00018 0.012 16.6 6.4 1 23 352 375 352 375 0.93 5 11 0.0064 0.43 11.7 0.2 3 23 383 404 382 404 0.97 6 11 0.00012 0.0082 17.2 1.8 2 23 418 439 417 439 0.95 7 11 0.0002 0.013 16.5 1.7 1 22 445 466 445 470 0.92 8 11 3.6e-05 0.0024 18.8 4.3 1 23 478 501 478 501 0.97 9 11 0.0033 0.22 12.7 0.1 1 23 507 530 507 530 0.96 10 11 1.3e-05 0.00084 20.3 0.2 1 23 539 561 539 561 0.98 11 11 0.0037 0.25 12.5 0.1 1 23 567 590 567 590 0.94
Sequence Information
- Coding Sequence
- ATGGAGGACAACATAAAATCGAAAAATATGTGTTGTCTTGGCTGTTTGGTGAAAAACAATGAACTTCCCTTGGAAATGATAACCCTACAGAATGGAACTATGAAGGCAATACTACAGATGGAGAATTTAGTTCTATGTTATATTTGCAAGAGAATAGCTCAACATGTGGAgttattcatacaaaatgttcAAAGCAATCAAATATTAATGGAAAACTTTAGTatcGATACAGACTCGGCCTTTGAAATAATACGATCGCAGACTCAACCTTTAGTGAACCTCACACACCTAACACTGGACAGTATAGAACTCTCCGGTGACGTGATGAGTACGGAAGAGAAATATGCGATGTTTCACTCTTCAAATAAAGTGAAGATAAAACTTGAAGAGGTTAAGGAAGAGAATGAGTTGTTGGACCACTTGGAGGGGGAGTATGTTGATGATGATTCAGatttCCAGGGTCAATTTGTGAAGGAAGAAGATGATTTTCCATTAAAAGAGTTGTTCAAAACGGAAATAGAAAATGGAATTGTCTCCAAACACAGAAAGATGACTAGAaagaaacacaaaataaaaaataagactaaAGTGAAAATAGAGGATGACAGTGATTTACAGAATGaTATGTATAAAGTAGAACAAATATTGATAACGAGGGAACAATGTATGAAAGAGAGGGAAAACAATAGAGCAGATAAGAAATATCTCAATTCTACGTTTAAGTGTGAAGACTGCATaaaaggatttatttttaaagcgagCTTCGAAAAGCACATGGAGAAACATAGTGAGAGAATGGGCGACTATGTATGTGATATTTGTAAACAAAGAACAAATTCCGAGGAGAAATTGTTAGCGCACAAGAAGTATCATGAAATTCGTTACAAGTGCAAAGCGTGCGATTTGACCAGAATATGTCGCAGCACGATATTGGACCACTACGCCGCCTACCACTGTTGCGACTGCGCACGTCATGTCTGCTCACATTGCTCCAAGCAGTTCAATACGATATTGGACCACTACGCCGCCTACCACTGTTGCGACTGCGCACGTCACGTCTGCTCACATTGCTCCAAGCAGTTCAAACGCAAAGCATCATTGAGAAAGCACATCTTCAACCGGCACCGGCAAAAAGAGAGGGTGTTGTGTGTTTACTGCAGCAAGACGTACGCCAGCGTGGAAGTACTCAAGTCTCATATGATAACGAGACACCCGAAAGAGGTGTCCGCCGTGAAAAGGAGTAAAAAGTGCGTGTGTCAATCGTGCGGTATGGCGTTCAATTCCCCGTCGCAACTGAAGAAACATTCTTTGAAACATTCAGACGCCAAGGATCACTACTGCGTGGAGTGTGATAAGAGTTTTAAGACTGAAGAAACGTTGAAATATCATCTTACGACGACCTCGATACACGTCAACTATATGGAGCTAAGgtACCCGTGCTTACATTGTGACAAGCGTTTTGGAACCAAACGAAATCTGGAACACCACACGAACAGGATTCATTTGAAACTGAAACCGTTCCCTTGCGATAGTTGTGAAAagGCTTACGTCACAAATTGGGCGTTATCTGAACACAAGCGACTCGTCCACGAGGGGTACAAGAGACCTCTCAGATTCCCCTGTCCGATGTGTGACAGGGTTTTTGACCGTAATCAGATCCTGAAGGCTCATCTTCGGACACATACAGGTGAAAGACCATATCAATGTGCAAAATGTCCGGCGTCTTTTGGACAATCCAGCGCCCTGGGCACCCATAATAAGCTGATACATCTTCGACTGACCAGGGACGGGAAACCTAAGGCCGCTgtcaaataa
- Protein Sequence
- MEDNIKSKNMCCLGCLVKNNELPLEMITLQNGTMKAILQMENLVLCYICKRIAQHVELFIQNVQSNQILMENFSIDTDSAFEIIRSQTQPLVNLTHLTLDSIELSGDVMSTEEKYAMFHSSNKVKIKLEEVKEENELLDHLEGEYVDDDSDFQGQFVKEEDDFPLKELFKTEIENGIVSKHRKMTRKKHKIKNKTKVKIEDDSDLQNDMYKVEQILITREQCMKERENNRADKKYLNSTFKCEDCIKGFIFKASFEKHMEKHSERMGDYVCDICKQRTNSEEKLLAHKKYHEIRYKCKACDLTRICRSTILDHYAAYHCCDCARHVCSHCSKQFNTILDHYAAYHCCDCARHVCSHCSKQFKRKASLRKHIFNRHRQKERVLCVYCSKTYASVEVLKSHMITRHPKEVSAVKRSKKCVCQSCGMAFNSPSQLKKHSLKHSDAKDHYCVECDKSFKTEETLKYHLTTTSIHVNYMELRYPCLHCDKRFGTKRNLEHHTNRIHLKLKPFPCDSCEKAYVTNWALSEHKRLVHEGYKRPLRFPCPMCDRVFDRNQILKAHLRTHTGERPYQCAKCPASFGQSSALGTHNKLIHLRLTRDGKPKAAVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -