Atra007031.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063557.1:1321562-1326507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.51 34 5.8 2.7 2 23 32 53 31 53 0.96 2 13 0.00042 0.028 15.5 4.7 1 23 91 114 91 114 0.98 3 13 0.0023 0.16 13.1 0.6 1 23 116 138 116 138 0.98 4 13 0.026 1.8 9.8 0.0 1 23 172 194 172 194 0.96 5 13 0.64 42 5.5 3.8 3 23 222 243 221 243 0.88 6 13 1.3 86 4.5 4.5 1 19 249 267 249 271 0.83 7 13 3.5e-05 0.0023 18.9 0.1 1 23 277 300 277 300 0.91 8 13 0.74 49 5.3 0.0 9 23 302 316 300 316 0.92 9 13 1.3 89 4.5 1.4 3 20 322 339 321 342 0.88 10 13 0.00022 0.015 16.4 1.2 1 23 347 369 347 369 0.98 11 13 0.00092 0.062 14.4 1.0 3 23 377 397 375 397 0.95 12 13 4.1e-05 0.0027 18.7 2.2 1 23 403 425 403 425 0.98 13 13 1.1e-06 7.5e-05 23.6 1.9 1 23 431 454 431 454 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCTCCCGCGCCGCCAATTTTCGGCACCGAGCCCAAAATGCTAATAGCAACCGCTAAACTAACTACAATCGACTTGATCGGCGGCATCAAGTGCCACCTCTGCCTTAATACATTTGGAAACAAGAAAGAATTTGACACTCACTATCTGAATCACAATACGGGGAGCCCTAACATTGTGTATACTTGTGTAGTATGCCACAAAGAAATGAATGCCTACCCAGCTTTCCGTAACCATTGCTATTTGATACATGTTGTGAAAGATAAATTCAAATGCAAAGACtgtttcaaaacattttcaaaacacAGCATTCTACAGCAGCATATGGATACAATGCACAAGTTTGTTTGTGCAACATGTAAACAACAATTCCCAAACAAGAAAGAATGGCAAATGCACCAGGTGACGCACAAAAGTGACAGCCCACCGTATGACTGTCAGATTTGCAAGCAGTCCATACAAACGGTTGATGACTGCGAACAACACGTTGACGAACACAGCACAGTGACATACTCATGTCCAATTTGCAACGAAACAATCCCAGACAAAAGCTTAACTGTTGAACATTTAGTCAAACATTTCGGAGTGCCCGAAGATATCATTCCGGAATCAGAAGTCGAAATTCTAGAGGAAAGTTCCATAGATTTGATTGGAATTCTCTGCTGTTACTGCGGTATAACTTGTAAGACGCGTTCGGAATTCGATCTGCATTTCATTGAGCAACATAACAAGAATATCATATACTCCTGCAATATTTGTGGCAAACAGTATGATAAATATAACACTTTTGGGAACCACTGCTACTATCATTACTCCAAAGGCAGATTCgaGTGCGACGAGTGCGACAAGTCGTTCCCGCGGCTGTCGCTGCTGGTGCTGCACACGGCGGCGCGCCACGCCACATTCGACACTCCAAAAGACCTGAAAGACCACCAAGCAGTCCACAAAACTGGTAACCTTTGCCAACACTGTGGCCTTCAATTCACCTCGCTGATGGCATGCGAACGCCACATACCGCTGCATCGCAAGAAACAGTATACATGTCCAGTATGCAACAGGAGCTACGCAGAGAAATATCTCGTCATGAAACACATACAACATCACTTCTCCTCAGTTTTACATCTATGTAAAATCTGCGGTAAGATATTCAACGCCAGGAACCGTCTCGTGCAGCACATCAAAATTCATTCGCAAGAACGCAGCCACAAATGCACTTTCTGTGGCAAGGGCTTCGTCAAAGAGCAACAGTTGACGCAACATCTGAACATTCACACGGGCCTGAAGCCGTTCCAGTGTACCGTGTGCCCGAAGACGTTTGCCAGCCAACCCAATTGGCACAAACACATGCGGAGGATGCACAACACTAGCAAAGTTACAATTGAAAAGACTGCTTATGGTACCGTTGGTGAAACGTTGAAAATGCAAACGCAGAAATTGAATAACAACAATTTGGTTAAAGATGATTTTGTTGATTCGACAAGCTCAGAAATGGAGTCTTATTCGTTCGTGGGAGAGTCTGATGATAGTTTGGTGGAGTCCGATGGGATAGATCCGGTGGCTATGGAGCAGGAATCAAAGATATTTGAAACAAACAGTGTGGAAACTAATGTCGATATTATCGAGAGTTCCGGAGGTAATAATATAGAACAGGAGACCATAGATGTGCCACATTTTGATGATTTAATGCCCGTGGACAGTGTTGATTCATTTGTGGCTgCCGTAACAGCATCAGCATTCGCCTCACCAACTCCTCAACCAGGCTCCGGGCCACCACAGGAGTACGGACCTGATTTCGGTAAGGACTCCACAGGTTTCCTAGACCTGGATGACCAGATACTCCCACACATAGATCCGTTGCTCACAATAAAACCGGACATGTATTCAAACGATTATAACTTCCAATACGAAAATTACGAACAGTATAACGACTCGAATGTCTATAAATGGGAGCCGATAATTGCTAAAGTATTTTCAGGGGCCTACGGGTATGAATCTGATGGTAGGATGTCAGTGAACACAGATATATTTTAA
- Protein Sequence
- MASPAPPIFGTEPKMLIATAKLTTIDLIGGIKCHLCLNTFGNKKEFDTHYLNHNTGSPNIVYTCVVCHKEMNAYPAFRNHCYLIHVVKDKFKCKDCFKTFSKHSILQQHMDTMHKFVCATCKQQFPNKKEWQMHQVTHKSDSPPYDCQICKQSIQTVDDCEQHVDEHSTVTYSCPICNETIPDKSLTVEHLVKHFGVPEDIIPESEVEILEESSIDLIGILCCYCGITCKTRSEFDLHFIEQHNKNIIYSCNICGKQYDKYNTFGNHCYYHYSKGRFECDECDKSFPRLSLLVLHTAARHATFDTPKDLKDHQAVHKTGNLCQHCGLQFTSLMACERHIPLHRKKQYTCPVCNRSYAEKYLVMKHIQHHFSSVLHLCKICGKIFNARNRLVQHIKIHSQERSHKCTFCGKGFVKEQQLTQHLNIHTGLKPFQCTVCPKTFASQPNWHKHMRRMHNTSKVTIEKTAYGTVGETLKMQTQKLNNNNLVKDDFVDSTSSEMESYSFVGESDDSLVESDGIDPVAMEQESKIFETNSVETNVDIIESSGGNNIEQETIDVPHFDDLMPVDSVDSFVAAVTASAFASPTPQPGSGPPQEYGPDFGKDSTGFLDLDDQILPHIDPLLTIKPDMYSNDYNFQYENYEQYNDSNVYKWEPIIAKVFSGAYGYESDGRMSVNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -