Atra019379.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063575.1:5633196-5641685[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.067 4.5 8.5 1.9 1 20 261 280 261 281 0.94 2 13 0.0004 0.027 15.6 0.3 1 23 290 312 290 312 0.96 3 13 0.023 1.6 10.0 4.0 1 23 316 338 316 338 0.94 4 13 0.091 6.1 8.1 3.5 1 23 343 366 343 366 0.92 5 13 4.5 3e+02 2.8 0.1 3 23 373 394 373 394 0.81 6 13 0.058 3.9 8.7 0.2 5 20 406 421 405 422 0.94 7 13 0.019 1.3 10.2 0.8 3 23 431 452 430 452 0.93 8 13 0.0096 0.64 11.2 0.0 3 23 487 507 486 508 0.92 9 13 0.17 11 7.3 3.8 1 23 511 533 511 533 0.96 10 13 0.00047 0.031 15.3 0.3 1 19 587 605 587 610 0.92 11 13 1e-05 0.00068 20.6 0.7 1 23 616 638 616 638 0.98 12 13 1.2e-05 0.00078 20.4 2.3 1 23 644 666 644 666 0.98 13 13 0.00028 0.019 16.0 1.0 1 23 672 695 672 695 0.97
Sequence Information
- Coding Sequence
- ATGTTGAAATATCCCACTTGTCGTTGTTGCCTGGCGGTGGACGGCAAACTCCTGTCCCTGCATTATGGAGATGCCGCTCAGCTGTACAAGGATGCTACCGGCGACCCGGTGGAACCATCAGACTCGTTGCCGCAACACGTCTGCGTGTTCTGTCTTCAGACATTGCGCAAGTACTCGCAGTTCAGGGCTCGATGTCACGCAGTGCTGAACGTGATGTACCGGGCATTGAGCCAGGGGACAGAGataacgaTAGACTACACACGCTCATTAACTTCGAAGCACAAACAATTGAGACCACAATTCTCACAATCAGATACAGTAACGTTAGATGTAGTCGCTGATGAGAAACCTCACGATTCACTCAACCCACTAGACTTACCAGAATCTCTGGAGTTCAAATTAGAAAATGATGATAAACATATAGATATTGATAATAAATTACTCGAACCTAAAGAAGAATTATCTGAAGACGTTGTCTTTGCAGAAAAAGATAATGACTCTGAAAGAAATGAGCTATTGGACGCCGACGATGATTTTGATTCGTTCGCTGATAGCTTAGTTGCAGTGGATCTCAAACCGAAAAGAACTAATAAGAAATGCGAAGTTcgtaaaaagataaataaagaaCCGACGAAAAACGTAAGGAAAGGTAGAAGAAAGAAATCCGATAGTAAAGGAATGATGGCGCTCGCCGAATCTTTGGGTTTCAATTTGACAGTGCTGAGTTTAGACGAGCAAGTGAAAGAGATAGAAGACAAGAAGAGGGAGACGAGCAACCTGTTCGTGTGCGACCGCTGCGGGAAGCACTTCCTCAACGCCCAGTGCCTGGAGCGGCACAAGGCGTGCCACGTGTTGGCGCCGGGCAGCTTCATGTGCGATCTCTGCTCGTGggttttcaaaaagaaaaatctcctGATGGAGCACATTTTGGATCACAGATACATCTTCAGCTGCAAATACTGCGACTTCAAAACGAAAAAGAACTCCACATTGAAACTGCACAACGAATATCATAAGGGGAAGCGCTACGTGTGCAAATACTGCAGCAAAGTGTTCGAGAAGATCAGCAGCCACTTCACTCACGTGAGGCTGAAGCACGAGGCCGTGCTGCCGTGGTGCGAGCTCTGCGGCGAGGCCTTCATCGGCGACAAAGGCGTTGTCAGCCACAAAAAGCTGATGCACAGCAACATTGAGGAACAATATCCGTTCGCGTGCGAGTGCAGCAAGCGATTCAGAAGTGAAGCTGCGTTGAACAGACACAGAGTCCTTAAAGGTTGTGATCTGCCCAACTGTGTTCACTGCGGCGAAGCGTTACCGACACCGCAGCTGCTGAGGCATCACTTGATACAGCGGCACATAGACGGCGCCGTGCCGGCCACGTTCGACTGCGGCGGCTGCGTGTTCCGCTTCTACTCGGCGGGCGCGCGGGCGCGGCACTCGTGCGCGGCCGCGGCGGCGTGCGCGCGCTGCGGGGAGGGCTTCCCGCGCGCCGACCTGCTGGCCGCCCACGTGGCGGCGCACCACGACATGCACAGATGCGAGGAGtGCGCGCGCCAGTTCACCAGCAAGCAGTTCAAGATCCACGTCCAGAAGAAGCACGCGCGCGCCGACGCGCTCGCCAGCAAGCTCGCCGACAAGCGCGCGCGCACCAAGCGGGTCTCCGGCCTGCTCGACGCGCGgGTGCGGCAGTGGCGCGTGGTGGACGGCGACGCCATCAAGCAGGTGGCGCCGCGGgcggccgccgcgcgcgcctgCTCGCACATCTGCGAGGTCTGCGGGAAGGGCTTCGCGAATTCGTCGAAGCTGTCGATACACAAGTGGCGCGTGCACCGGCCCGAGGCGCGCTTCCCGTGCGCGCTCTGCCACAAGAGCTTCCGCTCCAAAGTGGCCTTGAACGTGCACGAGCGCGTGCACACGGGCGAGCGGCCCTACCAGTGCTCGCAGTGCCCCAAGGCGTTCAAACACCGCGGCGCCTACACCCGCCACTACCTGatcCACTCGGGGCAGCGCAACCACGTGTGCTCGATGTGCGAGAAGTCGTTCCAGACGTCCACCGCCGTCAAGATGCACATCCAGACGGCGCACATGAAGCTGCCGTGGCCCGCCAAGCGGAGGCACAGCCAGCCCGCGCACTGA
- Protein Sequence
- MLKYPTCRCCLAVDGKLLSLHYGDAAQLYKDATGDPVEPSDSLPQHVCVFCLQTLRKYSQFRARCHAVLNVMYRALSQGTEITIDYTRSLTSKHKQLRPQFSQSDTVTLDVVADEKPHDSLNPLDLPESLEFKLENDDKHIDIDNKLLEPKEELSEDVVFAEKDNDSERNELLDADDDFDSFADSLVAVDLKPKRTNKKCEVRKKINKEPTKNVRKGRRKKSDSKGMMALAESLGFNLTVLSLDEQVKEIEDKKRETSNLFVCDRCGKHFLNAQCLERHKACHVLAPGSFMCDLCSWVFKKKNLLMEHILDHRYIFSCKYCDFKTKKNSTLKLHNEYHKGKRYVCKYCSKVFEKISSHFTHVRLKHEAVLPWCELCGEAFIGDKGVVSHKKLMHSNIEEQYPFACECSKRFRSEAALNRHRVLKGCDLPNCVHCGEALPTPQLLRHHLIQRHIDGAVPATFDCGGCVFRFYSAGARARHSCAAAAACARCGEGFPRADLLAAHVAAHHDMHRCEECARQFTSKQFKIHVQKKHARADALASKLADKRARTKRVSGLLDARVRQWRVVDGDAIKQVAPRAAAARACSHICEVCGKGFANSSKLSIHKWRVHRPEARFPCALCHKSFRSKVALNVHERVHTGERPYQCSQCPKAFKHRGAYTRHYLIHSGQRNHVCSMCEKSFQTSTAVKMHIQTAHMKLPWPAKRRHSQPAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -