Atra007053.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- zfpm1
- Assembly
- GCA_032362555.1
- Location
- CM063557.1:1566396-1576123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.1 2.1e+02 3.3 0.6 2 23 5 26 4 26 0.96 2 13 0.0011 0.075 14.1 1.8 2 23 993 1015 992 1015 0.91 3 13 1.1e-05 0.00073 20.5 2.2 2 23 1118 1139 1117 1139 0.97 4 13 0.00036 0.024 15.7 2.2 1 23 1145 1167 1145 1167 0.97 5 13 0.0095 0.63 11.2 2.5 2 23 1174 1195 1173 1196 0.95 6 13 0.33 22 6.4 1.0 6 23 1210 1227 1208 1227 0.96 7 13 0.017 1.1 10.4 0.7 3 23 1234 1255 1233 1255 0.96 8 13 0.0097 0.65 11.2 0.1 2 23 1271 1291 1270 1291 0.97 9 13 0.0054 0.36 12.0 0.7 3 20 1299 1316 1297 1319 0.86 10 13 0.0015 0.097 13.8 0.5 1 23 1327 1349 1327 1349 0.98 11 13 0.0067 0.45 11.7 7.2 1 23 1355 1377 1355 1377 0.98 12 13 7.8e-06 0.00052 20.9 1.3 1 23 1383 1407 1383 1407 0.98 13 13 0.0012 0.082 14.0 5.1 1 23 1413 1435 1413 1436 0.95
Sequence Information
- Coding Sequence
- ATGGACCAACAGCAGTGTCCAGTTTGTACCCTTTTTCTACATAATGGTATGACCTTGGAGTCTCATTTAGATACGCATCCCAAAGACCAGGTTATTAAAGCATTGTGTAGTTTGGCCAACAAAGGTAGCAGTTATGGCAGTAGAACATCAACACCTGTTCATTCAGAGCGTTCCTATAGGAGTCGCTCTAGGACACCAGCCACCACCGAGGATAGATGGAATAGTTCACATCGCAACTCCGACCATGATAAATATTGGAGAAGAACTCCTAGTAGGCCTCCAAAATCAAATTCAGTGTTGAGTTCATCTCGAAATGCCACACCAGATATAAGAATTGGTGAtataaattttgaaagtaaTACATCAACTCATGCTAATCAGTTCAGTGGAGCACCATTTGTCATGAAAACTGATAGAGTACAAAACAGTTATCCCACTATACCTGAATTTGAACAACAATATATTTACATGCAAGATCCACAGGATGACAGGGAGATCAAATATTCAAGGAGTGCAGAGTATACTGCCCTCAATAGCAATTCTGCTGTGTTCAGTCACAACATGCCAGCTGCAGGCCCTGCTGTCAAATTGCAGACTACCTTGCTCCCTCCGGTACAGAGCAGGGGCCCAGACATTGTTAAGGTTATGCCTAAACCAAATAACATACTGGTGAAGACAAACGTAAGTGGTGTTCAGTATATAGCACCAAGCGTGAAGCCAATGCATGTGGTAGTTCCTACGAGTAGAACATTCCTTCATAAGAACATACAGAATAACATGATCGTGAGCAACAGTCTGCCCACTGGACAGATGGTGGATACAAAATGTATATCCGGTGCAATTCCTAGCAGCCAGTTCAGTCAGATCCCAACAGGTGCTTTTACACCGGGCACAACTGTTGTTACTCAAAATTCGCAAATTATATACCAAGAAATGGTCCATAACCTTGATGGTAAACCTTTCGTTTCGAGCATACCTGCGGTATTGACCAGCCACGAGAATGTTACTAATGTAGCCCAAACAAGTTCCGTGTATCAGAATGTGATGGTTGTGGACCAATTTGGGAATTCCTCATGTATGTATACTACACCACAGCAAATCATACCAAAGGCTTGCAATTCTACTGTTTTCACCACAACCTCTAATACAAGTTCAAGCCATGTTGATAAGACTTTATCCAGCCGTGATGCAAATAAAACTCTAATAATAGAAGTGGCCCCAATAGTGTCTAAAGCACCTGCCAATGAAGCAGTGTCGAGCACAACATTACCTCAACCTGATCCCAGCACCCCTAGCTCTAGTCAATCCGGCAATGACAACGCACCAACTGAACGAATAGAAGCTAAAAGTGACTCGGCAGTTACGACGAAAGGTCTCAAAATTCTCAGTAACATAAAGGTCGAAGTGCCTGTTCAGCATCATAAGAATATGCTCAACACAATCATGGATCTGACGGGTTCAAATGATCCAGATTATCCCGAAAGGTGCCCTTCTCCTGAGAAGATATTGCCCGACTTAGAAGATAGTGATAACAATCAGTTGTCAGAAGACACGCAGCCCTCTGCATCGAGTGCAGACAGTTTAGTTTCGCACACATTTTCTGTGATAAAGAATGTGGGGAATCCTCCTGCTTACAAAGAGAACTCAAACAAATCCACAGTAGTTGATAGTAAGATAGACACAGAGTTCTCTGATAGTTGTCCAGTCCCTGATTTAATATGTAATGAAAAGCCTTCCGTGTCTCCGTGTAGTGAGTTATCGGAGCAGGGAGACAACTCCACTGATCGCCGCTTAATGTCCCCTAAACCCCACAGCAGTCAAAGCTGTAGCAGCAGTGTAGCGTCTAGTAATAAACCAGTTGTGAAAACATACCGGAATAATACATTAAGACTGAATAACATTTATGTAAAGAAGCacaagaaaattttacaaataaagaatgCTAAGCCTTTCCCTCTAAATAATGATATAGAAGTTGAGATAGAGCCAAGAGCATCATCTTCTAATAAATCACCAGAACACTACACAATGAATAAAATGCATCAGCCCgagaaaattgaaaataagGAGAAAACCAGTAAATTGAAGACTGTGTCTGTGGAACAGATTGTGGAGAAGGAGGATCAAAATGATGATCATGATTTTGATGCTGATACGGAGGAGCAGTCTATGGATATAGAGCCTGAACCCTCCACTGTGAaaaacagttttacaacaaGTATAGATGTAGTGCAGGTTAAGGAGGAGGTTAATACCAGTAATGAGGAGAGTTTTAGCAACGAAGCCAGCGGGTCGAATCGTGGCCTGACGCCGTTGGAGACGTTGCGGCCGATCAACGTCATAGCGTATTCGCACCTACCAGGAGATGAATTCGACGAGGAATCAAATCACAGGGAGCTGTTAGAACTAGAAGCGACATCTAAGAACAAGCAGTTTGTCAGTATGATGAACGACAATTACTTTGGCGACAACATTTACGCGGATTACTTCACACCGGATCGCGTGGAATCGTTCGACACCGACCGCGGGGAAGCGTCGTTTTCTAAGGAGACCCAGAAGGATGGGATTTATATTTGGGGTGAATCGTCTCAGAAGGAGAATGAGTTCGTGTTGCCGAACTTTGTACACGAGAGTTATAAGGTAGCGGAGAGTAGCGGGATAGATTATTCTGAGATGCGAGAGGAGAGCGGTGAGCGGGACAGCAAGGCGGACGTGTTGAGTGAGAGCCGAAGCAGCGAGGCTCCGCTGAACATCCGCGCGGACGAGAAGATGCCGCCGCGTGGCGAACTTAGCGGCCAAGAGAGCAACGGCGATATGGAATCACCATGGACCGGGATGTACACGGAGGTAACGCCAGCGGAGCCCTATGACCTCATAGCGCGCGAGAGCTGGGTGTCCGACGGTTCCGAGGTAGATCCTGACGAGAAGGCGGACAACCTTGGCGACGAACTACGCTTCGCAAAGAGCAGACTTTGCACGTGCACTCAATGTGGCGCCAAATTCTCATCTCCCAAGGAACTTCGGTCCCACAAGTCTTTAGCACACGCTTTACCCACGTGTTCTTCCACCAAGACCTCCTACAGCCGAATGGTGACTGCTAGAACTATTAAGAAGGAGGAGAAGATTGAAGAAAGCTTGCCAACCAGTACACTGCTTACGTTAGACTCAAAGAAGACAATAGCGACTACAATACTGCAAGTGTACGACGTTATGAACGAGGCCAAGCCCAAAATCGAAGCTCTAATAAAACAGGAGCCCAAACGGAGGAGGAAGGACTATGTGTGCCCCACTTGCAAGGTGGATCAGCTGACGGAGTTGTCTTTCCACGCCCACCTGAAAATCCACCCGCTGGAGTGTCTCACGTGCGGGAAGTGTTTTTTCAGGCGAGCCAACCTAGCGCTGCACATGAAGACGCATTTGGGAATCAAGAATTACAAGTGCGAAGTGTGCGAGAAGCGGTTCGTGACCCGGCAGAAGCTGATGGAGCACCACAACGCGCACACGGGCCGGGCGCCCGTCAAGTGCACCGTGTGCGACGACACCTTCCGCAGATACTCCAACATGGTGCAGCACAGAGACCGCCACCACTTCCAGAAGAAGGCGAAGGTGCGCGACTTCGTGTGCCGCTGCGGGCTGGTGTTCCACTCGCGCGCCAAGCTGCAGTGGCACGCGGAGACGCACGAGGAGCGGCCCAAGGCGTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGGCACGTGCGGCGCGCGCACAACGACTGCTACACGGCCGCCCGCCGCGGCAGCGCCGACAACGTGCCGTGCCCCGTCTGCAAGCAGGTCTACCTCAGAACAAACCTCCGTGCCCACCTTCAAACCCACAGCGGCAAGCGACCGTTCCTCTGCATAATCTGCAACAAGGCATTCACCACCAAATGGAACCTCAAACTCCACCGATGGACCCACATGAGCCGTTCAGCGAAGCCCTTCAAATGTACCCTATGCAAAGGAGCCTTCATCCGTCAAACCGAATATATATCTCATATGAACGCTCACAAGTCAGTCAAACCGTACACATGCAACTACTGTGGATGCCAATTCATAAGGAAATATAACTGTCAGAGGCATGTTAGAGAACATGAAATGGCCAAGAAGTATGTGTGTAAGGTGCCCGAGTGTGGTAAGTCATTCCATAGAAGTTATTACTTATCCGAACACATGAAGGTCCACAGCGGAGCTAGACCGTTCTCGTGTAATATATGTGGTAAGACATCGAGCAATAAGTCCAATCATAATAAACATGTGAAAATACACCACACCAGGGAATCGGTGGCTACGGAGGCCTAA
- Protein Sequence
- MDQQQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCSLANKGSSYGSRTSTPVHSERSYRSRSRTPATTEDRWNSSHRNSDHDKYWRRTPSRPPKSNSVLSSSRNATPDIRIGDINFESNTSTHANQFSGAPFVMKTDRVQNSYPTIPEFEQQYIYMQDPQDDREIKYSRSAEYTALNSNSAVFSHNMPAAGPAVKLQTTLLPPVQSRGPDIVKVMPKPNNILVKTNVSGVQYIAPSVKPMHVVVPTSRTFLHKNIQNNMIVSNSLPTGQMVDTKCISGAIPSSQFSQIPTGAFTPGTTVVTQNSQIIYQEMVHNLDGKPFVSSIPAVLTSHENVTNVAQTSSVYQNVMVVDQFGNSSCMYTTPQQIIPKACNSTVFTTTSNTSSSHVDKTLSSRDANKTLIIEVAPIVSKAPANEAVSSTTLPQPDPSTPSSSQSGNDNAPTERIEAKSDSAVTTKGLKILSNIKVEVPVQHHKNMLNTIMDLTGSNDPDYPERCPSPEKILPDLEDSDNNQLSEDTQPSASSADSLVSHTFSVIKNVGNPPAYKENSNKSTVVDSKIDTEFSDSCPVPDLICNEKPSVSPCSELSEQGDNSTDRRLMSPKPHSSQSCSSSVASSNKPVVKTYRNNTLRLNNIYVKKHKKILQIKNAKPFPLNNDIEVEIEPRASSSNKSPEHYTMNKMHQPEKIENKEKTSKLKTVSVEQIVEKEDQNDDHDFDADTEEQSMDIEPEPSTVKNSFTTSIDVVQVKEEVNTSNEESFSNEASGSNRGLTPLETLRPINVIAYSHLPGDEFDEESNHRELLELEATSKNKQFVSMMNDNYFGDNIYADYFTPDRVESFDTDRGEASFSKETQKDGIYIWGESSQKENEFVLPNFVHESYKVAESSGIDYSEMREESGERDSKADVLSESRSSEAPLNIRADEKMPPRGELSGQESNGDMESPWTGMYTEVTPAEPYDLIARESWVSDGSEVDPDEKADNLGDELRFAKSRLCTCTQCGAKFSSPKELRSHKSLAHALPTCSSTKTSYSRMVTARTIKKEEKIEESLPTSTLLTLDSKKTIATTILQVYDVMNEAKPKIEALIKQEPKRRRKDYVCPTCKVDQLTELSFHAHLKIHPLECLTCGKCFFRRANLALHMKTHLGIKNYKCEVCEKRFVTRQKLMEHHNAHTGRAPVKCTVCDDTFRRYSNMVQHRDRHHFQKKAKVRDFVCRCGLVFHSRAKLQWHAETHEERPKACLYCSDKFVHAASLTRHVRRAHNDCYTAARRGSADNVPCPVCKQVYLRTNLRAHLQTHSGKRPFLCIICNKAFTTKWNLKLHRWTHMSRSAKPFKCTLCKGAFIRQTEYISHMNAHKSVKPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHTRESVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220927;
- 90% Identity
- -
- 80% Identity
- -