Atra016145.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- Bcl11a
- Assembly
- GCA_032362555.1
- Location
- CM063569.1:5768220-5774289[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0049 0.33 12.1 1.8 2 23 79 100 78 100 0.96 2 12 0.032 2.1 9.6 0.9 3 23 108 129 106 129 0.93 3 12 0.54 36 5.7 0.1 2 23 137 159 136 159 0.88 4 12 0.0046 0.3 12.2 6.5 1 23 165 187 165 187 0.97 5 12 0.00014 0.0093 17.0 4.3 1 23 193 215 193 215 0.97 6 12 0.00017 0.011 16.7 1.3 1 19 221 239 221 241 0.93 7 12 0.081 5.4 8.3 1.2 3 19 262 278 261 283 0.91 8 12 4.2e-05 0.0028 18.6 2.2 1 23 586 608 586 608 0.98 9 12 0.00012 0.0082 17.2 2.4 1 21 615 635 615 638 0.90 10 12 0.0079 0.53 11.5 0.5 1 23 646 669 646 669 0.95 11 12 1.2e-05 0.00082 20.3 1.9 1 23 675 699 675 699 0.95 12 12 0.00046 0.03 15.4 2.3 1 21 705 725 705 726 0.95
Sequence Information
- Coding Sequence
- ATGGAGCCTATTAAATTGGAATTTAGTGTACCTTGTTATTATAGTTTGTTATTTACAGAAACAGAATCTTCAGATTCCTTGCTTACCAAGTGTAAATCCCAAGATGGTATGTATGAGTTGGGAACAACTCTTCCTTCACATGGGTCGCTTCTGGAGCCCGATGACGTGCTATCGCAATTCCTTACGGGGGACGAATTATTTGAAGAACCTGACCTTAACGGACCCACCACTTTACATTGTGAAATTTGTAGCAAAAAGTTTGACAATGCTAAAAAGTATTATGGGCATTTGCGAGTCCATTCCAAGGACAATCTTTGGATTTGTGaGAAATGTCCTAACCAGAAGTTCTCCACGAAGCAGCAGCTGATGAAGCACAGCCTAAGCCACCAGCCCTTGGAGCGCATGTGGCGTTGTCCACAGTGCACCATGGCATTTGAGGCTTTGTGGAGGTTGCAACAACACTTGTTCGCTAAACATCGCATGTACAGGCCCCACAAATGTGATAAATGTGAGAAGTCATTCAACAAATATTGTGATCTGATGAAACACAAAGAAGTTCATAATCGTGTAAAAAAGCACACCTGTTCAGCTTGCAGCGTGCACTTCACCGACAAGTCTAATTTGAAGCGGCACATGTTGCTCCATACTGGGGAGAAACCTTTCTTGTGCCCTGGCTGCGGGTGTCGGTTCAAACAGTTGAGTTCATTGAACCGGCACAAAGGAAATTGCACATTTAGTAAGAATATTAACGAAATAGAAGACAAAACCGTGCGGAAGAACTACTGTCGGGTTTGTGGCATGACATTCCAGTATAAGAGTGCGTTATTGGAGCATTGTGTGAGacaacataataataatacaagtGAGGCCGACAAAACAGACAAATCAAACCAAATGCACGCGGACGTGAACAGAACAGTGGATAACATTGTAGATGACATCCTCTCAGCGGAGGACGACTACATGACCATGTCCACGCAAAATGACATACTGAATGTATACAACAATCCCTCCGAAGTAGACACTAACACAGACAACCTTATGCAAATAGAATTCCTAAAAGAAATGAACCAATTACACATACTTGATGATGAATTATTCTACAATGATATAGATTTAGATAGCTTTCATAGCAACCAAATATTCAATAccacaaataatataaatatagattataATAACGAAAAGAATGCGGAAACTCTTTTTGACTATACCGACGCCGCAGGCAAGAGTGTTGATCAGGATATAATGAATGCTCTGTATCATGTGAAAGCTGAACATTTGCCTGATGAATTGTTGAATGTGAATGATACTGTGAATTATGCTGAAACCAAGACGGAACCAGTGCCCCCTACAGTTGCTGTCAACGAATGCGCTACAATATTTGAAAGTGATGTAGATTTAGAATCGAGTGCTCATCTAGCAGCGAATTTGAGCCAACTTATTGGCGAAAACTCGGTGCAGTATATCTCTACAGAAGACGATGAcacttttattataagtttgaaTAGTGAAATAGATGCAGAGCAATTGACTGATATGCTAAATATAGGCCGCGTTGACAGTAAAAACAATGgtaaggaaattaaaaaagaggaGAACACTCAAAGTACTGAGAGTTATGCTGATATTGTAGTTGAAATACAGGAACCTAGAATTGAAGACGATGTAGAAGAACCTGAACATAaggaattatttaataatgaagaaaaagaaaacaaattgaaagagcccaaagtgaaaagaaaaagaatttttgtatGTCGAACTTGTAAAAAGGAGTTCAGCAAAAGGGATAACTACAGATCTCATATAGCCACCCACAACCCGTCTCTCCGCCGCCACAAGTGCCCCGTCTGCAAGGAGCGGTTCAGTTACCGTTCTACCCTCAACAAGCACTTTGCGGCGAGCCACAAACCTGTCGTGTATCCCGCGCATGCGTGTACACTCTGCAATAAGAACTATAAAGCTGCTTGGATGcTAAAAGACCACATTGAGCGGGACCACGAGAGGCTCGCACCACATGTCTGCGATAGGAAGGAGTGCGGGAAGAAGTTCTACAAGAAATCGGATCTCGTCGTACACATGAGGTTACACACGGGCGAGCGGCCGTACTCCTGCGACATCTGTCACGTGTCGTTCCAGCAACTCTCGCATTTCAAACGACACGAGAGGGAAGTGGACTGTACAAAGAGGTaa
- Protein Sequence
- MEPIKLEFSVPCYYSLLFTETESSDSLLTKCKSQDGMYELGTTLPSHGSLLEPDDVLSQFLTGDELFEEPDLNGPTTLHCEICSKKFDNAKKYYGHLRVHSKDNLWICEKCPNQKFSTKQQLMKHSLSHQPLERMWRCPQCTMAFEALWRLQQHLFAKHRMYRPHKCDKCEKSFNKYCDLMKHKEVHNRVKKHTCSACSVHFTDKSNLKRHMLLHTGEKPFLCPGCGCRFKQLSSLNRHKGNCTFSKNINEIEDKTVRKNYCRVCGMTFQYKSALLEHCVRQHNNNTSEADKTDKSNQMHADVNRTVDNIVDDILSAEDDYMTMSTQNDILNVYNNPSEVDTNTDNLMQIEFLKEMNQLHILDDELFYNDIDLDSFHSNQIFNTTNNINIDYNNEKNAETLFDYTDAAGKSVDQDIMNALYHVKAEHLPDELLNVNDTVNYAETKTEPVPPTVAVNECATIFESDVDLESSAHLAANLSQLIGENSVQYISTEDDDTFIISLNSEIDAEQLTDMLNIGRVDSKNNGKEIKKEENTQSTESYADIVVEIQEPRIEDDVEEPEHKELFNNEEKENKLKEPKVKRKRIFVCRTCKKEFSKRDNYRSHIATHNPSLRRHKCPVCKERFSYRSTLNKHFAASHKPVVYPAHACTLCNKNYKAAWMLKDHIERDHERLAPHVCDRKECGKKFYKKSDLVVHMRLHTGERPYSCDICHVSFQQLSHFKRHEREVDCTKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -