Atra012519.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063564.1:6575865-6585139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.061 4.1 8.7 0.8 1 20 4 24 4 26 0.93 2 12 7.3 4.9e+02 2.1 0.1 2 20 32 50 31 52 0.89 3 12 0.53 36 5.7 0.3 1 12 206 217 206 226 0.83 4 12 1.6e-05 0.0011 20.0 1.4 1 23 371 393 371 393 0.98 5 12 0.037 2.5 9.3 4.9 1 23 402 424 402 424 0.98 6 12 0.0004 0.027 15.6 0.5 3 23 481 501 479 501 0.96 7 12 0.00066 0.044 14.9 1.7 1 23 517 539 517 539 0.98 8 12 1.7e-06 0.00011 23.0 4.5 1 23 545 567 545 567 0.98 9 12 0.00063 0.042 14.9 5.2 1 23 573 595 573 595 0.97 10 12 0.0002 0.013 16.5 1.7 1 21 601 621 601 623 0.93 11 12 6.4e-05 0.0043 18.1 0.9 1 23 627 649 627 649 0.98 12 12 0.00038 0.026 15.6 0.1 1 23 657 680 657 680 0.96
Sequence Information
- Coding Sequence
- ATGGGAGAATTTAAATGTCCTTTGTGCTGTGATAAAACCTTCGGTTCTAAGTTATCACTTATACAACACTTATCAGAAATGCTTTCAAACGTAAGTTGTCCCatatgtaaaaacaaatggTCTTCCGTAACTCATTTAATAGAGCATCTCACTCTGGATAATTGCCAGTCTGATAACACAACTCAGACTTATAATGTCCAAACTTTAGAAGGAAATCAAGATATAACTGCTGATAATAAACCTTATATTTCCAATAATCAAATTATAGAAAATGTAAATAGTCAAGAAACAGACCTGTCTTCCCAAATCAATAATGAAGAGGTAAATGAGACCATAGATATAAACAATGTTAACAAAATGTATACAGTATTGCTTGATAAGAATACTATGAAGACATGCCTCCAGACTCAAGAATTGAAGTTTGTGGAGGAAAATGGACAGAGTCGTTTTGTGTTTATGGAAGAAATGGACTCTGATTTGGACTCCGGAAATACTGTCGTcactaaacaaaataatgatgGAACCATATCATTGACTACTGTTAAAGatttaaaaatagatgCAGAATCAATGTTAAATTCAGCAGAAAATGAGTTAGAAGAAAATCAAGAAGTGTACAGTTGTAACTCATGTGGCGTTTCATTCTCATCAGTCATTGAACATATACAGAACTATCACAATGATCAAGAGGTGGTAGTCGaggAACCTGCAGAGGAAGGAGAAACAGAATTACCAATAGAATATGATCCCATGATGACAGAGGGTAGCATAAACGACACAAAGTTCACACCACGACGTATGATCACAGAAACAGGTGATATTGTTGAAGCTCCAGCCACTATGAAACCTATTGAAAcatcagataaaaataatgcagAGAAACCTGCCCGTGGTCCAACAAGGCGGTATGTTCAAATAGACAAGTTTTGTGACAGTCACATCAAAGACATCAACCCCAGCAAGGataaagATGAACCTTTTCACAGAGCTATAGTAAAGGAAATGGAAACAACAGACGGACAGAAAGTAAAGATGTTTCAATGTATAGTATGTAATATTTACGTCTCATCTCTTACTGATATGAAGAGTCAACCTTGTAAAGCATtgaaaTACTCGTGTCCACATTGTCCAGTAGCATATGAAAACTCAAAGTCACTGTGCGCACATATGAAAGTACACAAAGCATCAAAAGTGGAGCCCACATATAACTGTGAGATTTGCTGCACGACCTTCCAAACGAATAAATCGTTGAAGTTGCACAAACGAATGCATGATCCAGTCAAAACTCGTCCTATAGATCCGCCTGTGAGATCAATAGATGGCACCACAGACGCAGTGACAAATGACGCGCGTTACCTCTGCAACGTTTGCAACAAAATGATACCCGTCGACTACCGCACTATACACCAACACTCGCACAAGACTAGTAATAAGATGAACTGTACTATATGCAACAAGAAGTTCCAGTCGGCTGAGTATTTGGATATGCATATGAAGGCGCATAATATGAATAAGATTCCTGAgaacaaaacagacagagaacTCCCTTACAGCTGTGTGTACTGCCCGCGACAATTCTCGAGACCGCACGAAAAAGTCAAGCACGAGAGGATTCACACGGGTGAAAAGCCCCACAGCTGCGAGATATGTGGCAAGAGTTTCCGAGTGTCGTACTGCCTCACGCTGCACATGCGCACTCACACCGGCGCCCGGCCCTACGCCTGTCCGCACTGCGGGAAGCGGTTTAAAGCACACAGCGTGTACAACCATCACCTTTTGACGCACTCTGAGAAGCGAGCGTACAAATGTCCGATGTGCCCCAAAGCGTTCAAAACCTCCGTACAACTAGCCGGACACAAGAAATGCCACACCAAACCGTTCTCCTGTCAACATTGTAACAGGCCCTTCGCATCACTATACGCGGTCCGAGTGCACATGGAGACGCACTCGCGTCAAAACAACTTGAAATTTACGTGTCCACTATGCGGCGCGCGGTACGCAAGAGCTTTTGCTTTGAAGGACCATGTGAAACAGGCGCATCAGTTGGACGGTGACTCCATAGACAAAGTGGGCCCTAATGGCGAAAAAGACTGGAGTATAATTCTCGGTGATGGTGAACCTGAGCCTATCAAAACGGAAATCATCAAGTCCACTTTAGAAGAGGTGACGACATCGAAAGACAATTCATCCAATTCATTGATTACAATCCTGGATATAAACGATGGAGAGATGATAGTACCGTGA
- Protein Sequence
- MGEFKCPLCCDKTFGSKLSLIQHLSEMLSNVSCPICKNKWSSVTHLIEHLTLDNCQSDNTTQTYNVQTLEGNQDITADNKPYISNNQIIENVNSQETDLSSQINNEEVNETIDINNVNKMYTVLLDKNTMKTCLQTQELKFVEENGQSRFVFMEEMDSDLDSGNTVVTKQNNDGTISLTTVKDLKIDAESMLNSAENELEENQEVYSCNSCGVSFSSVIEHIQNYHNDQEVVVEEPAEEGETELPIEYDPMMTEGSINDTKFTPRRMITETGDIVEAPATMKPIETSDKNNAEKPARGPTRRYVQIDKFCDSHIKDINPSKDKDEPFHRAIVKEMETTDGQKVKMFQCIVCNIYVSSLTDMKSQPCKALKYSCPHCPVAYENSKSLCAHMKVHKASKVEPTYNCEICCTTFQTNKSLKLHKRMHDPVKTRPIDPPVRSIDGTTDAVTNDARYLCNVCNKMIPVDYRTIHQHSHKTSNKMNCTICNKKFQSAEYLDMHMKAHNMNKIPENKTDRELPYSCVYCPRQFSRPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEKRAYKCPMCPKAFKTSVQLAGHKKCHTKPFSCQHCNRPFASLYAVRVHMETHSRQNNLKFTCPLCGARYARAFALKDHVKQAHQLDGDSIDKVGPNGEKDWSIILGDGEPEPIKTEIIKSTLEEVTTSKDNSSNSLITILDINDGEMIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146725; iTF_00720658;
- 90% Identity
- -
- 80% Identity
- -