Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063578.1:2334122-2338757[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00041 0.028 15.5 0.1 2 23 225 247 224 247 0.92

2 10 0.014 0.93 10.7 0.2 2 23 273 295 272 295 0.94

3 10 0.043 2.9 9.2 1.7 3 23 320 340 318 340 0.95

4 10 1.7e-05 0.0011 19.8 1.8 1 23 344 366 344 366 0.98

5 10 0.036 2.4 9.4 2.1 1 13 371 383 371 384 0.93

6 10 8.3e-05 0.0056 17.7 3.4 3 23 404 425 402 425 0.93

7 10 4.7e-07 3.2e-05 24.8 1.4 1 23 432 455 432 455 0.98

8 10 0.012 0.83 10.8 0.4 1 23 461 483 461 483 0.96

9 10 8.4e-07 5.6e-05 24.0 3.1 1 23 489 511 489 511 0.99

10 10 1.1e-05 0.00076 20.4 1.3 1 23 517 540 517 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00041	0.028	15.5	0.1	2	23	225	247	224	247	0.92
2	10	0.014	0.93	10.7	0.2	2	23	273	295	272	295	0.94
3	10	0.043	2.9	9.2	1.7	3	23	320	340	318	340	0.95
4	10	1.7e-05	0.0011	19.8	1.8	1	23	344	366	344	366	0.98
5	10	0.036	2.4	9.4	2.1	1	13	371	383	371	384	0.93
6	10	8.3e-05	0.0056	17.7	3.4	3	23	404	425	402	425	0.93
7	10	4.7e-07	3.2e-05	24.8	1.4	1	23	432	455	432	455	0.98
8	10	0.012	0.83	10.8	0.4	1	23	461	483	461	483	0.96
9	10	8.4e-07	5.6e-05	24.0	3.1	1	23	489	511	489	511	0.99
10	10	1.1e-05	0.00076	20.4	1.3	1	23	517	540	517	540	0.97

Sequence Information

Coding Sequence: atGAGTAAAACGCCGTGTCGATGCTGCCTTATCCGACCTCCAGACAAAGATCtgaagcaaatatacaaatacCTCGGAAGAACCGAAGTTTACGCTGATATGCTAAAGGAATGCTTTGAAATTCATCTTAAACTCAGTGATGTCGAACGTGACAGTGGTATATGTGAGACATGCGTCACTCGGCTACGAGACTCGTACGAGTTCAAGCAGCAAGTGCAACAGTGTCAGAAGGAGTTCCAGAAGACACTCACGGCTGGAGTTGACATCAAAGATGAGAAGGCGGCTATTGTCAAAGAAGAGGTAACGGATCCCGATGACGAGAACGACATATTTTTCAtggaattaaaagaagaatactcaGATTACGACATGAAGGACGAGGACGATAAGAATCTGGCGGAGATACTGGGCTTCTCGGACGTCGCggcgaagaagaagaagaagaagaccaGCAGAAAGCTGGATCTGAAGAAGAGTCACGatCGCAAAGCGAAGAAGATGCTGACGGGCCCTTTGAAAATATCTCTCAGGGCGCTCTCGGAGAAGTTGAAAAGTCCGGTCATTTCCGACATCCGCTTCCTCAGCGAGAACAAGAAGCACAAACTCAACATTGAAAACGTACTCAAATACTCAAATGCGACGCCATTTTCCAACAAAACTCTGTCGGGCATAGTCTGCGCGTACTGCAAAGAAACGTATAAGAACCCCGAAGACTTGCGCATTCACACACAAGACACTCACAAGAATTCAGAGCTGAACGACAACAAACGCATAGACAAGAACAACTTGTCGATAAAAATGGACATCACTAATCTAAAATGCAACATTTGTAACACGAATGTCGATGTTATATCGAATCTGAAAACACATTTGGTCAAGGAGCacgatataaaattttatccgGACGTATACGATTATATATTGGAATTCAAACTAACGGCCGACGACATAATGAATTGCGCATTGTGTCACTCCACGTTCGAAACGTTCAAAATGTTGTTACAACATATGAACGGCCATTATAGGAACTACATATGTGATGTTTGCGATCTGgggtttataaacaaacatagaCTTAAGAACCATCAAAGGACGCACGAGTTGGGGACATTCAAGTGTACGTTTTGCGATAAAGTTTTCAGTACACGCGTGAGGAAAGTGTGTCACGAGAAATACACGCATAACACGAGTGCCCGTTATACAACCAACTGTCCGCATTGCGACAAATCGTTCACGAGTTACTATCAGAGGAACAGACACATGTTTCAAGAGCACAACACCGCGGCCGCGTCTTACAAGTGCAATATATGTGATAAATCGTTCATTTTGAAGTCGAAATTGACGTCTCATATAAAAAAAGTGCATTTAATGGAGCGTAATCATATCTGCGCGGAGTGCGGTCAGGGATTTTTCATTAAACAGTCTTTAGATGAACATATGATTAAGCATAACGGTGAGAGAGTGTATAAATGCACGGTGTGCCATAAAGCGTACGCTAGGAAGAAAACTCTGAGGGAGCATATGAGGATACATAATAATGACAGGCGTTTCAAATGTGGAGTTTGTGGGCTGGCGTTCGTTCAGAAGTGTAGCTTAAAGAGTCACATGCTGTCCAATCATGGGATTACTTTAGCGGAGTTCGAATCCGCTAGAGCTGATATAATTAGCCCGTAA
Protein Sequence: MSKTPCRCCLIRPPDKDLKQIYKYLGRTEVYADMLKECFEIHLKLSDVERDSGICETCVTRLRDSYEFKQQVQQCQKEFQKTLTAGVDIKDEKAAIVKEEVTDPDDENDIFFMELKEEYSDYDMKDEDDKNLAEILGFSDVAAKKKKKKTSRKLDLKKSHDRKAKKMLTGPLKISLRALSEKLKSPVISDIRFLSENKKHKLNIENVLKYSNATPFSNKTLSGIVCAYCKETYKNPEDLRIHTQDTHKNSELNDNKRIDKNNLSIKMDITNLKCNICNTNVDVISNLKTHLVKEHDIKFYPDVYDYILEFKLTADDIMNCALCHSTFETFKMLLQHMNGHYRNYICDVCDLGFINKHRLKNHQRTHELGTFKCTFCDKVFSTRVRKVCHEKYTHNTSARYTTNCPHCDKSFTSYYQRNRHMFQEHNTAAASYKCNICDKSFILKSKLTSHIKKVHLMERNHICAECGQGFFIKQSLDEHMIKHNGERVYKCTVCHKAYARKKTLREHMRIHNNDRRFKCGVCGLAFVQKCSLKSHMLSNHGITLAEFESARADIISP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00720637;
90% Identity: -
80% Identity: -