Atra019420.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063576.1:281667-287459[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.53 35 5.7 1.0 2 23 277 299 276 299 0.92 2 13 0.053 3.5 8.9 0.3 1 23 305 327 305 327 0.98 3 13 0.018 1.2 10.3 3.8 2 23 334 355 333 355 0.95 4 13 0.005 0.33 12.1 0.0 3 20 363 380 362 382 0.93 5 13 0.092 6.1 8.1 0.7 1 23 412 435 412 435 0.96 6 13 0.0014 0.096 13.8 1.2 2 23 470 491 470 491 0.96 7 13 0.0025 0.17 13.0 0.1 3 20 501 518 500 520 0.94 8 13 0.0051 0.34 12.1 1.3 2 23 536 557 535 557 0.97 9 13 0.0027 0.18 12.9 0.8 1 23 564 586 564 586 0.98 10 13 4.5e-05 0.003 18.5 1.1 3 23 593 613 592 613 0.98 11 13 7e-06 0.00047 21.1 1.3 1 23 619 641 619 641 0.98 12 13 2.4e-05 0.0016 19.4 0.3 1 23 647 669 647 669 0.94 13 13 2.4e-05 0.0016 19.4 2.6 1 23 675 698 675 698 0.98
Sequence Information
- Coding Sequence
- ATGTCAGAAGCTACAGAATTTAACAAAAACGAACAATCGTTCATACCTGTCActgatttaaatgatgtgaaaaACATGGATTATGGACAATCTATACGTGAGGAGTCGTCGACGGTGGTGTCCGCAGACACTGCAGGGGACAACGCCAATCCTGCTGAAACAAAATatagggaaccacacgacacaagtCCCGTTTCGCGGGGCCACTGTCGTTTCTGCGCCACCGAAATGGCTTCTGGCGACCTCTTCGACTTGTCCACTGAAGACATCATAGAGAAatatcaaaaactactggtgTACCTCAAGTTGGAGGTAGATTTCTCGCCAACCAACAAGTTGCCTAAACAAGCGTGCGGGTCATGCCACAATACGTGTTTAGAAACATATCGGTTCtttttaaaagtgaaaaaagcTCAGGACGAGTTGAAcgcaatatataataatgtcacATATGTTCTGGAAGTGGAAGGAGCTGGCAATAAAGAGGTTCCAATGGAAATTGATGTGATACAGAATATGGTGGTCGGTAAAGGCGTAATAAAAACGGAAGTCGAAGATGGTTATGATGATGCGCACTTGGAGCAGAGCTCGTCCGATGAGGAGGTGCAATTGACAGATTTGGATGACTTAAAACTAAGCAAAGACACCATCACCCAAAAACCTGCATCAAAATCCCTTAAACAGCCAAAAACTGAAGCAACACACGACGTAAAGCCCAAAAGACGAGCCAAAAAGACAGCGTACAAAGTCAAGAAAGTGCCGATGAAAGTTTTGAAATCCGAGACGAATGTTAAGAATGTCAATTTCTCGTGGGCAAGTTATCTGTGGTCGTGTGACCATTGTAAAGCCGAGTTGGATACGATGGAGAACCTGAGGCTGCACAGCAGGTTCTCGCATAACTATTGCTACGGGTTCACTTGTGTGGACTGCAACGATGAGTTTAACACTTTCAACGCGTTCGTGGAGCACGTCCGTATGCACAGGGAGTATTTGAGACTGTACTGCCAGTATTGCAACAAGAAGTTTAGAACCAAAATGGAGTGTGTCGCCCACACTCTCACCCACTGGAGCGACGGTCAGAAGATATGCGAGCTGTGTGGTGAGATATTCCCCAGTCAGGGCGCTCTGACACAGCACAAGAGCTCTTACAGaACGAAGCCGTTGACTCACAACACGAGGCGCAAAAGACCCAGACTGGTGGAGGGGCATTCGGGCTCGTGGGACGATTACATTTACACGTGTCAAGACTGCTATCAGgtTATGCCCAACGTACATACATTAAGAAGTCACGTCAGAGAAATCCACATGAAATGCTTTGCGATGAAGTGCGCAGACTGTCTGAGGGTGCATCGGTGTCACGGCGACCTGGTGAAACATGTACACGGACACAGGCCGGGCTTGAAGAATTACTGCCATTATTGCAACCAGCACTTCACCAACCCTGAGGATATGGACGCCCACGTGGAGGTCCACTTCTCAGGGCCACAAACCGACCGGCCTTGTTTCGGCTGCGGAGAGATATTCCAGAACGAGGACCAGCTCAGGAAGCACATCTTCGAATTCGGCGCTCTGAGGCGGCCGGGCCCTCACTCCGAAGACGAGGTCACTTGCGACATATGCTCCAAGAACTGTGTGACAGTTGGCAAATTGAAGATACACAGGAAAATACATGAATACAAGGAGAGGTGTTTTGTGTGTGATACGTGCGGTAACTCCTATTTCAACTACTGGACGTATCAGTCCCATATAAAAGTGCACGGGGAACGGACGGAGATATGCAAGATTTGCAAGAAAGGATTCCCGACCAAAGTCAAGTTGAAGAACCACGCTAAAACCCATTTGGTGGATAGGCCGTACTCGTGTGAGCAATGTGGCAGCGCTTTCAAAACGAAGACCAAGCTGACTCGTCACCAGATGATCCATACGGATGCTAAGCCGTACGTGTGTGTGATATGTGACAAGAGTTTCAGACAGAAGAACGGTTTGAAAGTGCATTCGGCTCAGCACACCGGTGTCAGGCCGTATCAGTGTGAGTTTTGTGATAGGACGTTCACGAATAACCCTAACAGGGATAAACATATGAGACGGAGACATGGTGTGCCTCTGTACAAGGCTAAGGAGGCTCCCAAAGAGATAATGGACTCGAACGCCAAGGAGTGGTTGAATCAGGTGACAGCGAATCAGAAGAAACGGAAGGATGTTAATGAGACTGTAGTTGAAATGAGTGGTGCAATGTAG
- Protein Sequence
- MSEATEFNKNEQSFIPVTDLNDVKNMDYGQSIREESSTVVSADTAGDNANPAETKYREPHDTSPVSRGHCRFCATEMASGDLFDLSTEDIIEKYQKLLVYLKLEVDFSPTNKLPKQACGSCHNTCLETYRFFLKVKKAQDELNAIYNNVTYVLEVEGAGNKEVPMEIDVIQNMVVGKGVIKTEVEDGYDDAHLEQSSSDEEVQLTDLDDLKLSKDTITQKPASKSLKQPKTEATHDVKPKRRAKKTAYKVKKVPMKVLKSETNVKNVNFSWASYLWSCDHCKAELDTMENLRLHSRFSHNYCYGFTCVDCNDEFNTFNAFVEHVRMHREYLRLYCQYCNKKFRTKMECVAHTLTHWSDGQKICELCGEIFPSQGALTQHKSSYRTKPLTHNTRRKRPRLVEGHSGSWDDYIYTCQDCYQVMPNVHTLRSHVREIHMKCFAMKCADCLRVHRCHGDLVKHVHGHRPGLKNYCHYCNQHFTNPEDMDAHVEVHFSGPQTDRPCFGCGEIFQNEDQLRKHIFEFGALRRPGPHSEDEVTCDICSKNCVTVGKLKIHRKIHEYKERCFVCDTCGNSYFNYWTYQSHIKVHGERTEICKICKKGFPTKVKLKNHAKTHLVDRPYSCEQCGSAFKTKTKLTRHQMIHTDAKPYVCVICDKSFRQKNGLKVHSAQHTGVRPYQCEFCDRTFTNNPNRDKHMRRRHGVPLYKAKEAPKEIMDSNAKEWLNQVTANQKKRKDVNETVVEMSGAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -