Atra017773.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- znf711
- Assembly
- GCA_032362555.1
- Location
- CM063572.1:6577107-6589606[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.28 19 6.6 0.0 1 23 114 136 114 136 0.98 2 19 0.018 1.2 10.3 1.8 1 23 143 165 143 165 0.98 3 19 1.1e-05 0.00073 20.5 1.7 1 23 197 219 197 220 0.95 4 19 0.0058 0.39 11.9 1.4 1 23 226 250 226 250 0.98 5 19 2.3e-06 0.00015 22.6 1.4 2 23 264 285 263 285 0.97 6 19 0.45 30 5.9 0.9 2 23 289 311 288 311 0.93 7 19 6.6 4.4e+02 2.3 0.0 15 23 318 326 313 326 0.89 8 19 0.45 30 5.9 0.9 2 23 330 352 329 352 0.93 9 19 6.6 4.4e+02 2.3 0.0 15 23 359 367 354 367 0.89 10 19 0.45 30 5.9 0.9 2 23 371 393 370 393 0.93 11 19 6.6 4.4e+02 2.3 0.0 15 23 400 408 395 408 0.89 12 19 0.45 30 5.9 0.9 2 23 412 434 411 434 0.93 13 19 6.6 4.4e+02 2.3 0.0 15 23 441 449 436 449 0.89 14 19 0.45 30 5.9 0.9 2 23 453 475 452 475 0.93 15 19 5.9e-05 0.0039 18.2 3.0 2 23 487 509 487 509 0.97 16 19 0.054 3.6 8.8 0.2 1 23 516 539 516 539 0.96 17 19 0.0057 0.38 11.9 0.1 2 23 546 570 545 570 0.92 18 19 4.3e-06 0.00029 21.7 0.9 1 23 579 601 579 601 0.97 19 19 0.0015 0.098 13.8 0.1 1 23 606 629 606 629 0.97
Sequence Information
- Coding Sequence
- ATGCTATTGGTGGAGTGTACTAATGGGCAATTTGACATAACAAGTGAGGACATACCCTTGGAGTATGTGGCTGCTCAGATCGCGATGCGGTACCCGGCCCCGCCTCGGAGGCGGAGGCGGTCCGACTCTGATGATGAGTATATACCACCCCGGAggttgaagaagaagaagaaagtgAGAGAAGCCAACGTGAAACCGACATACAGGGGGAAGTCCAAAAAAGAAGAGAACATGCTATACTCCGAGGAAGTAACGAAACACATAGAAATAATAACGATAACGGAGGAGCAACGTCAGAGGGAGATTGGCGAAACTCTAAACCTGCGCAAGAACTTCGCATACAGATGCGAGTGGTGCGCACTCGGGTTTGTGCTGGAGGAGGCCTACGACATGCACATGAAGATACATTCGCCGGAAGCTGGCGAATTCGAATGCAGTCTCTGTCGCGCCCGCGTCAAATCCAAGACGATGTTATACAGACACCGGCTGCGCCACTACCGCCGGTACCGCTGCGCCATTTGTCTCATGATACACAAAGATAAGgACACGGCCGCGTCTCACGTGATGACCGATCATGAACGACAGGCGTTCGTCTGCGTCGAATGTTCTAGATCTTTCAAGCGTCCGCGTTACCTCGAGCGTCACATCGAACAACATCACACCAAATTGTTCAACTTCCAATGTCCCGAGCCGGACTGCAAGCGCGTGTTCCACGAGAGGGGGCGCTACCGGAGTCATGTCAGAAGTCACAAAGAGGAGATACGCAACCGTGCGTCCTCCTCGCTCGTTGTGTGCGCCGTCTGCGGCAAAGCTTACAAAAGCAAGAGCTGCCTGAAGCGGCACCTGCAGACACACCGGGCCACCGTGTGCACCCTGTGCTGCGTGCCGTTCCCACACCAGGACGCGCTGCGGCTGCACTACGCGAGGGTCCACAACTGTTACTACGACGGCTGCCTGAAGCGGCACCTGCAGACACACCGGGCCACCGTGTGCACCCTGTGCTGCGTGCCGTTCCCACACCAGGACGCGCTGCGGCTGCACTACGCGAGGGTCCACAACTGTTACTACGACGGCTGCCTGAAGCGGCACCTGCAGACACACCGGGCCACCGTGTGCACCCTGTGCTGCGTGCCGTTCCCACACCAGGACGCGCTGCGGCTGCACTACGCGAGGGTCCACAACTGTTACTACGACGGCTGCCTGAAGCGGCACCTGCAGACACACCGGGCCACCGTGTGCACCCTGTGCTGCGTGCCGTTCCCACACCAGGACGCGCTGCGGCTGCACTACGCGAGGGTCCACAACTGTTACTACGACGGCTGCCTGAAGCGGCACCTGCAGACACACCGGGCCACCGTGTGCACCCTGTGCTGCGTGCCGTTCCCACACCAGGACGCGCTGCGGCTGCACTACGCGAGGGTCCACAACTGTTACTACGACGGGGTCCACATCGGCGAGAAATGTCCGCATTGCGGTCTTGTCTGCGGTAACAATTCCTTACTCAACAAACATATAAAGCGGATGCACAAGGATCGCACTAAAAAATACCAATGTGACTACTGTCAGAGGCTGTACCTGACGAAAGGCGAGGTGCGAGCCCACATAATGTGGTCGCACGAGAAGCGGGGAGGTCACGCCTGCACCGTGCCCGGTTGCGGACGTGTGTTCAGGGCTCCAGCGCGGCTGCGCAGCCACACGCAGGTGGACCACCTCGGGCTGTCGCCCCCCAAGAACCACGAGTGCGTGCAGTGCGGGAAGGGATTCATCAACAAACAGGTGCTCCAGCGCCACATGCGCGTGCACTCCGACGAGAAGTACCCGTGCGGCGAGTGCGGCGTGGCGTTCAAGACGGAGCCCTACGTGCGCGTGCACTACCAGCGGAAGCACCTCAACATGACGCGCGCGCAGATCCGCGACCAGGTCCGGCTGAGGAAGACGCAGAGCATCAACCTGTTCAAACCCACTGTAAACGAGATAAAGCAGGCCAAAGTGACGCCCGCCTTGGATGCGACGGTGAACTCTTATATACCCATGTTTGAGACGTTTGTGGATGTCCAAAGGGATATATTGAATGATGGAGTCGAGGATGTGAAGCAGGAGCCGGGGGTTGAGTGTTGA
- Protein Sequence
- MLLVECTNGQFDITSEDIPLEYVAAQIAMRYPAPPRRRRRSDSDDEYIPPRRLKKKKKVREANVKPTYRGKSKKEENMLYSEEVTKHIEIITITEEQRQREIGETLNLRKNFAYRCEWCALGFVLEEAYDMHMKIHSPEAGEFECSLCRARVKSKTMLYRHRLRHYRRYRCAICLMIHKDKDTAASHVMTDHERQAFVCVECSRSFKRPRYLERHIEQHHTKLFNFQCPEPDCKRVFHERGRYRSHVRSHKEEIRNRASSSLVVCAVCGKAYKSKSCLKRHLQTHRATVCTLCCVPFPHQDALRLHYARVHNCYYDGCLKRHLQTHRATVCTLCCVPFPHQDALRLHYARVHNCYYDGCLKRHLQTHRATVCTLCCVPFPHQDALRLHYARVHNCYYDGCLKRHLQTHRATVCTLCCVPFPHQDALRLHYARVHNCYYDGCLKRHLQTHRATVCTLCCVPFPHQDALRLHYARVHNCYYDGVHIGEKCPHCGLVCGNNSLLNKHIKRMHKDRTKKYQCDYCQRLYLTKGEVRAHIMWSHEKRGGHACTVPGCGRVFRAPARLRSHTQVDHLGLSPPKNHECVQCGKGFINKQVLQRHMRVHSDEKYPCGECGVAFKTEPYVRVHYQRKHLNMTRAQIRDQVRLRKTQSINLFKPTVNEIKQAKVTPALDATVNSYIPMFETFVDVQRDILNDGVEDVKQEPGVEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -