Atra020554.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- ZFX
- Assembly
- GCA_032362555.1
- Location
- CM063578.1:3329717-3334826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.6e-05 0.0031 18.5 1.9 1 23 6 28 6 28 0.99 2 21 0.0037 0.25 12.5 0.7 1 22 35 56 35 59 0.91 3 21 5.9e-05 0.004 18.1 1.4 2 21 195 214 194 215 0.93 4 21 4.9 3.3e+02 2.7 0.7 3 23 221 241 220 241 0.87 5 21 4.5 3e+02 2.8 3.8 1 23 246 269 246 269 0.89 6 21 0.11 7.6 7.8 1.1 2 23 275 296 274 296 0.95 7 21 0.71 48 5.3 6.4 1 21 299 319 299 320 0.93 8 21 0.00023 0.015 16.3 1.1 1 23 335 358 335 358 0.95 9 21 0.00026 0.017 16.2 0.3 1 23 364 386 364 386 0.96 10 21 0.73 49 5.3 0.1 5 23 396 414 394 414 0.96 11 21 2 1.4e+02 3.9 0.4 1 23 420 443 420 443 0.87 12 21 0.11 7.4 7.9 1.2 2 20 563 581 562 583 0.88 13 21 8.5 5.7e+02 1.9 0.2 2 23 589 611 589 611 0.77 14 21 0.04 2.7 9.3 1.1 3 23 618 639 617 639 0.97 15 21 2.1e-05 0.0014 19.6 0.2 2 23 645 666 644 666 0.96 16 21 0.69 46 5.3 2.1 2 21 670 689 670 690 0.91 17 21 6.9e-05 0.0046 17.9 0.1 1 23 716 739 716 739 0.95 18 21 0.0065 0.44 11.7 1.0 1 19 745 763 745 767 0.80 19 21 0.088 5.9 8.2 0.1 1 23 773 795 773 795 0.97 20 21 0.13 8.9 7.6 0.5 1 23 801 824 801 824 0.78 21 21 0.0033 0.22 12.7 3.3 1 23 830 853 830 853 0.95
Sequence Information
- Coding Sequence
- ATGTCCGGTCGTAAATATCAATGTGAATCCTGTGAGAAGAAATTTTCCAGTCGTCAAAGTTTGGAGGAGCATAAAAACACTCATAAAAAAGTCAACGATAGATTCGTTTGTGACGTATGTAATGCGAAGTATAGTACTAGACGCGGCTACCAAAAACATCTGATGAATAAAGGCCACCACGTCCCATATATGTCTACTGATGGCAAGATACAAGCAGATGTACCTGCAGAGGTACCAGGAAGATATGACCGCAAGTTGCAATGTTCGGTGGACGAGCAATGCGGAGCGCCAAATGGGATTTGCAAGACTTGCGTGCATGACGCCATGGTTGCAATTAGCTTCAGGCGCCTCGTCCATGACTCCGCCGGACACTGGGACAATATCGCGTCATCGCTCACCGAACTCCACAATGCGACGAAGGAGGACAAGGCTTTTTACGTCTTCTACACACCAGATTGCAAATCAACTACAATAATCAAGGATCAGGCGAAAAGCGTCAAGAATACGGACGAAGCATTGCTAAGGCTCGTTGAATTCAGGGACAAAAAACCTAAAAGGGTCAAAAAGATGACGTTCGACTGCTCTTGTCCCGATTGCGGTAAAAAATTCACGAAACCATTACTTCTAAATAAACATCTGAAGAATACTCTGAAGAGAATTTGCAACAGGTGTGGCAAGTTAATGCCGAAATCCAAATTGGCGCAACACATGTCGAAATATCACGATATTGAAGTCTTTGATTGCAATATATGTCATAAACTGTTCGACGAGGAGAATAGAGTGACAGAACATTATTTGAAATGCCACGATAATAAAAGTATCCACTGTGATACGTGCAAAATGGGTTTCGATTCAGCAAGGTCTTTAAATGGGCATACGTATTCCCATTCTTTGTTCCACTGTAAAAACTGCTCTAAGAGCTTTGAAAATCTTAAATGCTTCTCGTACCATCAAGAGAAATGTTCGTCTGCCAAAGTTGTTAAAACACATGACAATATCAAGTACACCTGCGATTACTGTGGCTTGTCTTACGACAAGAAACCTTCACTGCGTGTTCACATAATTCATAAACATTTGAATGTCCTGCCGTACGTGTGCGAGCTATGTGGGAAACGAACTTCTACCATCGGCCACTTGCGTTCGCACGAAGCTATTCACACGCAAAAGAGAAAGATATACGAATGTTATTGCGGCGCGAGGTTGCGGACAGAAGTGGGTTACCAGATGCACCAACGCATTCATACCGGGGAGAAACCTTACGAATGCGAGGAGTGTGGAGATAAGTTTCTATCTGCTTCGCGGAGGCTGGATCACATAAAACGCAGGCATAGGAGTACACAAGAGATGCCGCATGGGTGTGACAAATGTCACGCGAGATTTGTACACGACGAGCCACTTTGTCCACTCTGCATCTGCATTACTTGTGTCTCCAGCGCCCTCGCAGTCCAAGAGTTCAGGATTTTCGTGAAAAATTCCCAAAAAATATGGTCCAAAGCCCTAAATTCCCTCAATGACCTTCCAGAAGCGTCTCCTCCAGTCAAAACCCTTTGCGCATTTATCAAACCTGACACGTTaactttacatacttataaaaattatactggAGGTGATTCTAAGACGgtgttgaataaaataaaaagtcgtATAACTAAGAAAAAACGCGTGGTACGTACGGGTCCACCCTGTTTTTGTCCAGATTGTGGAAAGAACTTCCTCAGTCCACATTACCTCGGTATGCATTTAAGTAATAGCGGCCAAAAAGAAGTGTGCTCCATTTGTGGACAAGTGATTTTGAGAGGGAAACACATGATTGATCATATGACTGAGGCGCACGGACAAAATTGTATACTGTGTAAACACTGTCCACAAATTTTCAACAGTGTATTAGAAATGAAGAAACATGTGAAGAGTGCACACAGAGATGGTTGTTTAACTTGTGGGGATTGCGGGAGGTCTTTTCCGAGAAAAGCGTCTTTTGAAGCTCATTCTCAAATGCACACGGTGAGGACTTGTCGAGCGTGTGGAACGCAGTTCACAAATAGAGCGTGTTATAGGGAGCACAGGTCTAAATGCGAGCCAAATGCAAAACCAGACATAAAATCTATACCACGAAATAAACGCGGCAACGTGAGAGATCCGGCGTACTTCGTTTGTGATTATTGTGCAAAAGTTTACACATCCCGACCACAACTGAAGAATCACATACTTTGGATACATATGAATGTCCGACCTTACCAGTGCACTTATTGTGATAAGAGATTCTATACTTCGGCAAGAAGAGCTGAACACAGTGTCGTGCACACCCGCGAAAGAAATTTCGAATGTGATATTTGTGGCGCGAAATTAGTTTCCAAAATGGCCGCCGTGTACCATAGGCGAAGGCATACAGGAGAAAAGCCTTACGAATGTAAAGATTGTGGTGAAAAGTTTTTATCTGCTTCGCGAAGATTAGAACATGCCAAACGAAGACACGGGAAAGGAGAAAGGCATCAGTGTTCGCAATGCCCAGCCAATTTCGTCAGAAATTGTGAGCTACGGAAACATGTTGCTAAATATCACAGCGCGCCACAAAATTATATGGTAGCGGTCGAAGGGTga
- Protein Sequence
- MSGRKYQCESCEKKFSSRQSLEEHKNTHKKVNDRFVCDVCNAKYSTRRGYQKHLMNKGHHVPYMSTDGKIQADVPAEVPGRYDRKLQCSVDEQCGAPNGICKTCVHDAMVAISFRRLVHDSAGHWDNIASSLTELHNATKEDKAFYVFYTPDCKSTTIIKDQAKSVKNTDEALLRLVEFRDKKPKRVKKMTFDCSCPDCGKKFTKPLLLNKHLKNTLKRICNRCGKLMPKSKLAQHMSKYHDIEVFDCNICHKLFDEENRVTEHYLKCHDNKSIHCDTCKMGFDSARSLNGHTYSHSLFHCKNCSKSFENLKCFSYHQEKCSSAKVVKTHDNIKYTCDYCGLSYDKKPSLRVHIIHKHLNVLPYVCELCGKRTSTIGHLRSHEAIHTQKRKIYECYCGARLRTEVGYQMHQRIHTGEKPYECEECGDKFLSASRRLDHIKRRHRSTQEMPHGCDKCHARFVHDEPLCPLCICITCVSSALAVQEFRIFVKNSQKIWSKALNSLNDLPEASPPVKTLCAFIKPDTLTLHTYKNYTGGDSKTVLNKIKSRITKKKRVVRTGPPCFCPDCGKNFLSPHYLGMHLSNSGQKEVCSICGQVILRGKHMIDHMTEAHGQNCILCKHCPQIFNSVLEMKKHVKSAHRDGCLTCGDCGRSFPRKASFEAHSQMHTVRTCRACGTQFTNRACYREHRSKCEPNAKPDIKSIPRNKRGNVRDPAYFVCDYCAKVYTSRPQLKNHILWIHMNVRPYQCTYCDKRFYTSARRAEHSVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYECKDCGEKFLSASRRLEHAKRRHGKGERHQCSQCPANFVRNCELRKHVAKYHSAPQNYMVAVEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -