Basic Information

Insect: Amyelois transitella
Gene Symbol: ZIPIC
Assembly: GCA_032362555.1
Location: CM063575.1:5468867-5489564[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00038 0.025 15.6 2.1 1 23 273 295 273 295 0.99

2 11 0.038 2.6 9.3 0.3 1 23 302 324 302 324 0.98

3 11 0.17 11 7.3 0.3 1 23 328 351 328 351 0.97

4 11 0.013 0.9 10.7 4.5 1 23 358 380 358 381 0.96

5 11 1.2e-06 8.2e-05 23.4 0.4 2 23 387 408 387 408 0.98

6 11 0.0011 0.07 14.2 2.6 1 23 414 436 414 436 0.97

7 11 0.00014 0.0096 16.9 1.8 1 22 442 463 442 467 0.93

8 11 0.00034 0.023 15.8 0.3 1 23 475 498 475 498 0.94

9 11 0.023 1.5 10.0 0.0 1 23 504 527 504 527 0.93

10 11 1.5e-05 0.001 20.0 0.7 1 23 536 558 536 558 0.97

11 11 0.001 0.068 14.3 0.1 1 23 564 587 564 587 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00038	0.025	15.6	2.1	1	23	273	295	273	295	0.99
2	11	0.038	2.6	9.3	0.3	1	23	302	324	302	324	0.98
3	11	0.17	11	7.3	0.3	1	23	328	351	328	351	0.97
4	11	0.013	0.9	10.7	4.5	1	23	358	380	358	381	0.96
5	11	1.2e-06	8.2e-05	23.4	0.4	2	23	387	408	387	408	0.98
6	11	0.0011	0.07	14.2	2.6	1	23	414	436	414	436	0.97
7	11	0.00014	0.0096	16.9	1.8	1	22	442	463	442	467	0.93
8	11	0.00034	0.023	15.8	0.3	1	23	475	498	475	498	0.94
9	11	0.023	1.5	10.0	0.0	1	23	504	527	504	527	0.93
10	11	1.5e-05	0.001	20.0	0.7	1	23	536	558	536	558	0.97
11	11	0.001	0.068	14.3	0.1	1	23	564	587	564	587	0.95

Sequence Information

Coding Sequence: ATGCTTCAAGAAGAGTCTCTTGATGTTACCATGATGGATTGTGATCTGAAGCCCGTACTTGACCTGGTCAAGCCAATATGCCGTTGTTGCTTAGCCACTGACAAAAACGTCAAGAATGCTATTCTTTACAGATCGGAATTTCTTGAATTATCTGGCTTGGACGTGACGGAGACGGACGGCCTCCCCCACTGGCTGTGTTACGAGTGCTGCTCGCTGTTACGCAAAGCCGTAAGGTTCAAACGTAAGATGTTACGAGCCCACAACCTTCTGTACGAGTACCTCACTAGGTGTGCTCCGTTCCCAATAGACGCTCAAGATCCGGAGCTGAGTAAATACGCTGCCCCTGAACTGTGTGCAACAGACACCCTCGCTGTGGAGGTGGGGCGGGGCAAGGTGGGCTTCCATAAGGTTCTGCAGcacacgaaacaaataaacaaatacgaATTGGAGATTGAGGCGCCCGCGCACGACGACGTGAAGTCCGAGCGCGGGTTCTCGGACTACGAGGACAACATCGCATTGAATGAGTTCAGATCGACACTGAACCAAATGTCAGGGGAGGATGTGAACTGTTTATTGGAAGACCCCGAGCTGCTGACGAGGAAGaaaacgacgaagaagaagaaaacgAAGAAGCTCAGAACGAGGAAGGAGCGGATGAGCGAAGTGAAGAGCGAGGAAGATGAACCCAAAGTGAGAAACTCGATAAGGAAGACCGTGGAAATAGATCCGGAGAAGATAAGGATCGTGACCCTGAACCCTGAGGAGCAGGTCAGGCAGAGGGAGGAGGAGAGTAAGGCGGGCCTGCGTTTCCCATTTCAATGCAATCTGTGTTACAAGGGGTTCAATTTTCAAGTGAAACTGGATAACCACATGCAGAAACATAGTCCTTCCCGAGGTACGTTCGAGTGTAAGCTGTGTCGAATGTACCTCCCCACCGCCTACAGCTACAGCGTACACATGCTGATACACACGCGGCGGTACGAGTGTGTGCAGTGCGGACGGAGGATGATAGACAGAACCTCCATACTGGACCATTATCGgtcCCAACACGAGGGACAATTGACGTTGTACACGTGTAGCATATGCGGAAAGGTGTCAAACAACAATAAAACTCACAGAGGCCACATGAGGAATCACCACAGCGGTGACCGGCCGAAGTGTGAGCAGTGCGGGAAGACCTTCGTCAACAAAGACTCCTTGGCTGAACATCAACAGATCCACGAAGGCATCAAGAACTACGAGTGCTCCGCGTGCGGCGCGCGGTTCAGGACGAGGACGCAGATGAAGCATCATCAGGTCAAGCACTCCGACGCCAAGGATTACTACTGCGTCGAGTGCGACGTCAGATTCAAATCTGCGCACAATTTGAGACAACATCTACAGAAGAGTCTGAAACACAAAGACAAACAGTCACTCAaATACGCCTGCACCCGCTGCGACAAGCGCTTCGAGAGCGAGCGGGCGCTGCGCCAGCACGCGCTGGTGCAGCACGAGGGCGTGCGCGCGCACCGCTGCGCCGTGTGCCCCGCCGCGCTCGCCTCCAGGAGCTCGCTCGcTAAACACACATTAGCCGTGCACGCGGGCCGGCGACCTCCGCCGCGGCACATTTGCGACACCTGCGGGAAGGCGTTCCGGGGCAAGAGCGTGCTGGAGAACCACGCGCGCACGCACACGGGCGAGAAGCCGTTCGCGTGCGGCGTGTGCGCGCGCCGCTTCGCGCAGCGCACCGCCCTGCGCACGCACCTCAACCTCGTGCACCTCAAGCTGCCCAGGCAGGCCAAGGTGAAACCGCCTCCCGAGCCCATCCCCCAGCCGAAACTGGATGCTGTGGTCAAAGAAGATCAGGCGATGTTCGATGCGTGGGCGCGGCCGCAGGTGCCTTGCGACGTGTACTTCACCGTTACCGCCGGACCTTGA
Protein Sequence: MLQEESLDVTMMDCDLKPVLDLVKPICRCCLATDKNVKNAILYRSEFLELSGLDVTETDGLPHWLCYECCSLLRKAVRFKRKMLRAHNLLYEYLTRCAPFPIDAQDPELSKYAAPELCATDTLAVEVGRGKVGFHKVLQHTKQINKYELEIEAPAHDDVKSERGFSDYEDNIALNEFRSTLNQMSGEDVNCLLEDPELLTRKKTTKKKKTKKLRTRKERMSEVKSEEDEPKVRNSIRKTVEIDPEKIRIVTLNPEEQVRQREEESKAGLRFPFQCNLCYKGFNFQVKLDNHMQKHSPSRGTFECKLCRMYLPTAYSYSVHMLIHTRRYECVQCGRRMIDRTSILDHYRSQHEGQLTLYTCSICGKVSNNNKTHRGHMRNHHSGDRPKCEQCGKTFVNKDSLAEHQQIHEGIKNYECSACGARFRTRTQMKHHQVKHSDAKDYYCVECDVRFKSAHNLRQHLQKSLKHKDKQSLKYACTRCDKRFESERALRQHALVQHEGVRAHRCAVCPAALASRSSLAKHTLAVHAGRRPPPRHICDTCGKAFRGKSVLENHARTHTGEKPFACGVCARRFAQRTALRTHLNLVHLKLPRQAKVKPPPEPIPQPKLDAVVKEDQAMFDAWARPQVPCDVYFTVTAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -