Atra011016.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amyelois transitella
Gene Symbol
Sall1
Assembly
GCA_032362555.1
Location
CM063562.1:3583882-3585432[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0092 0.61 11.3 0.3 2 23 196 217 196 217 0.97
2 11 2.5e-05 0.0017 19.3 0.7 1 23 223 246 223 246 0.97
3 11 1.1e-05 0.00077 20.4 0.7 1 23 254 276 254 276 0.99
4 11 1.5e-05 0.001 20.0 2.8 1 23 282 304 282 304 0.99
5 11 5e-05 0.0034 18.4 0.7 1 23 310 332 310 332 0.98
6 11 0.0002 0.013 16.5 2.9 1 23 338 360 338 360 0.98
7 11 4.1e-05 0.0028 18.6 0.3 3 23 368 389 367 389 0.97
8 11 0.77 52 5.2 0.2 3 23 396 413 394 413 0.69
9 11 0.013 0.87 10.8 1.2 1 23 419 442 419 442 0.90
10 11 0.029 1.9 9.7 0.3 1 23 448 473 448 473 0.94
11 11 0.0043 0.29 12.3 7.4 1 23 479 502 479 502 0.97

Sequence Information

Coding Sequence
ATGGATCCAAATTTGTGCCGAGTATGTTTGTGTAAAACTGGTACCGTATCTCTATTTGGAAACCAGGGTAACATTCAAAATTGTGCCAAGATTATGCGTTGCGTGAACGTAAGTGTAGTGGAAGGCGATGGTTTACCACATTCGATGTGCGAAGGCTGTGCCATGGAGCTTAGTGTGGCGTACGAGTTCGTCCTAAAATGCGAAACATCTGATAAGGCGCTCCGTTGCGTGGCCACAGATAACTTCTCCGATGTCGACGCTAAGATCGAACTAGAAGATATCAATGGAGAAGACATTAAAAATGAACTTGATTTTATTGATTATGATAGTGATCAACTATTAGACACTATTAAACAAGATTATTCAGAAACCCAACTTTTGAGGAGTAAAACAGAGAAATCAAAAGTGAATAAAAGGTTTGAGATTGAATCTGAACCAGATAATATAAGAAACAGTGTACAAAGGGACCTTGAACAATTTACAGACATATTAGAATCTTATAAGAAACAAGAATctgatcataaaaaaaataataatttagccaatgaaagaaaaaaacagAGACGGTCCAATAGAGGACCAAGGAGTTGTGAAGTGTGTGGGCTGGTGACTGCTTGCCAGTCTGCACTTGATATTCACATGCGCACACATACTGGAGAGAAACCATTCCAATGTAACATTTGTAAAGCCCAGTTTAGGAATAAAGGAGGCTTGAAAAGTCACATAGAATCCCGACACTCATTCAATAGAGAGAAAAAATTCACATGTGAAATGTGTGGCAGTAGCTTTTATAGgaaaaatgatataataatacatatgagAACACATACTAATGAGAAACCTTATGTTTGTTCTTATTGCCCTCGTAGGTTTAGACAGATTGCTTGTCTAATACGTCACAGGCGTAGTCACACTGGAGAGAAGCCATATTCTTGTgcgatttgtaataaaaagtttgctgacaaatattttgttaaaaagcaTTTGATTGTGCATAGTGATGAAAAGAAATACTCATGTCACTTGTGCAACAAGTCTATGAAGACCAGAAGTGCATTGAATACCCATTTGAATTTGCATAAAAATCAGAAACAGAATATTTGCAGTTTCTGCGGGGCTGCTTTCAATATGAAAGGGAATTTGCAGACTCACATCCGCAGGTTACACTCTGAAAAGTCAGGCATATGTAGTGTTTGCTTGAAAACCTTTCCTGATGTAGAGGAGCATATGAGAAAGCATACTGGAGAGAAGCCTTTCGCATGCAAGCTGTGTAACCAACAATATGCTACAGAGCGTAGTCTAAAACAGCACACTGCCTTTAAACATGAGAACGCTGAAAAGTTTAAGTGTTCCATAGGAGATTGCACGAGAACATTCCCCACAGCTATGATGCTCGAGTTCCATCTCCTTAAACAACACACGAACAACACCCCTTACATTTGTCATCACTGTTCTCGAGGATTCTTCCGCACTTGTGACCTTTCTCGTCATTTAAGAGTCAGCCACATGGATCTCCAATTGAAAGAACcattaaataaaactgtttactAA
Protein Sequence
MDPNLCRVCLCKTGTVSLFGNQGNIQNCAKIMRCVNVSVVEGDGLPHSMCEGCAMELSVAYEFVLKCETSDKALRCVATDNFSDVDAKIELEDINGEDIKNELDFIDYDSDQLLDTIKQDYSETQLLRSKTEKSKVNKRFEIESEPDNIRNSVQRDLEQFTDILESYKKQESDHKKNNNLANERKKQRRSNRGPRSCEVCGLVTACQSALDIHMRTHTGEKPFQCNICKAQFRNKGGLKSHIESRHSFNREKKFTCEMCGSSFYRKNDIIIHMRTHTNEKPYVCSYCPRRFRQIACLIRHRRSHTGEKPYSCAICNKKFADKYFVKKHLIVHSDEKKYSCHLCNKSMKTRSALNTHLNLHKNQKQNICSFCGAAFNMKGNLQTHIRRLHSEKSGICSVCLKTFPDVEEHMRKHTGEKPFACKLCNQQYATERSLKQHTAFKHENAEKFKCSIGDCTRTFPTAMMLEFHLLKQHTNNTPYICHHCSRGFFRTCDLSRHLRVSHMDLQLKEPLNKTVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00013376;
90% Identity
-
80% Identity
-