Atra020310.2
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063578.1:1660248-1662655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.044 2.9 9.1 0.0 1 23 143 165 143 165 0.95 2 10 0.2 14 7.0 0.4 2 20 193 211 192 213 0.93 3 10 3.8e-05 0.0025 18.8 0.3 3 23 237 257 235 257 0.96 4 10 7e-07 4.7e-05 24.2 0.2 1 23 261 283 261 283 0.98 5 10 0.078 5.2 8.3 1.0 1 23 288 311 288 311 0.94 6 10 0.16 11 7.3 0.4 1 23 317 340 317 340 0.92 7 10 0.00021 0.014 16.4 1.3 1 23 347 370 347 370 0.98 8 10 2.5e-05 0.0017 19.3 2.3 1 23 376 398 376 398 0.98 9 10 2.6e-06 0.00018 22.4 3.1 1 23 404 426 404 426 0.97 10 10 1.7e-06 0.00012 23.0 1.0 1 23 432 454 432 454 0.98
Sequence Information
- Coding Sequence
- ATGTTAATGTTCCAGGTGTTATTGCTACCGCTCGGTGATACAAAGAGGCTGATCTGCGACCTGTGCATTGGGAAGCTGCAAGACTCATTGTCATTCAAGGAACAGGTTGAAGCTGCTCTGGAAAATTTGCAGACCATTGTTCAAACTCAAAAGATCATTAAGCAGGATGTGTCTCAGACGGAAGTGAAGAAGGAGTCCTCAGCCGACGAGGCTGATAATGAGCTGGACGGCCATTTCTGCGAAGAGGATGATATGGCCCTGACAGAGTTCAAAATCAAAGTGGAGCCTAAAGAGGAGGTGAAGAAAGCCAAGAGGTCAGTGACCAAGTCCAAAATGAAGTACTCAATCAAGAAATCAGACTTACACGACACCGACGCCATGATACAATCCGGATTGTTCCCGTTCAAAATCAAGAAGAACGGAGCCTTCTCATGCGCGGTGTGCCCAGAGATATCAACGAATTTAGACGACATAAGAAAACATATAGGCCAACACAACCGCACCAACATACATGTAGCATTCAAGAAGATGATGTTTTCAAACGCGCAGAGATTTTACAGGTACGAGAACAAATTGCGGTGCAAGATCTGCACAATTGATATTTGCAACTACGAAGACTTAAAACAACATTTGGAGAATTGCAGCCAGTtgaattataataagaaatggAATAATCTGCCGTTCAAACTCGAGAAAGACCAGCTGGACTGTCCGATTTGCAAGAAAACATTTCTTAACTATGTCAATTTGAACACACACATGAACGTTCATTATCCGAATTATATATGTGAGAATTGTGGCAAAGCGTTCGCTTCGAAAGCCCGTTTGAGGGGGCACATGAGGACGCACGAGGTTGGTACGTTCCCGTGTAGACATTGCGACGCTGTCTTCGACAGAGTCACGAAGAGAGAGAATCACGTGTCTAAAGAACATAAGTCCGGGGTGCGTTATGCTTGTAAGAGATGTAACATATCACTCACGTCGTTCTACGCCAGACAGAAGCATCTAGCCGAAGTGCACAATGAAGAACTTAAACGGTACAAGTGCAAAGCTTGTACGCAGAGCTACATCACACCGGGACACTTGTCGAGTCATGTGAGAAGAGACCATTTACACGAGCGGAATCATAAGTGTGATAAGTGCGATTTAGCGTTTTACACTAAGAATGCTTTGAAAATGCATATGATTAAACACGATGGGGAACGAATACACTCCTGTCCGATATGTCAGAAGTCTTACCAGCGAAAGAAGACGTTGAGAGAACATATGAGAATACATAACAATGATAAAAGGTTTGTCTGTCCCGTTTGTGGCAGAGCGTTCACCCAAAAATGTACTTTGAAGGGACACCTTAAGGTTCACGATAGAAAGCTAGATTTGGATGAGAGGATCATTCAGCCTTTACATTCTATATAA
- Protein Sequence
- MLMFQVLLLPLGDTKRLICDLCIGKLQDSLSFKEQVEAALENLQTIVQTQKIIKQDVSQTEVKKESSADEADNELDGHFCEEDDMALTEFKIKVEPKEEVKKAKRSVTKSKMKYSIKKSDLHDTDAMIQSGLFPFKIKKNGAFSCAVCPEISTNLDDIRKHIGQHNRTNIHVAFKKMMFSNAQRFYRYENKLRCKICTIDICNYEDLKQHLENCSQLNYNKKWNNLPFKLEKDQLDCPICKKTFLNYVNLNTHMNVHYPNYICENCGKAFASKARLRGHMRTHEVGTFPCRHCDAVFDRVTKRENHVSKEHKSGVRYACKRCNISLTSFYARQKHLAEVHNEELKRYKCKACTQSYITPGHLSSHVRRDHLHERNHKCDKCDLAFYTKNALKMHMIKHDGERIHSCPICQKSYQRKKTLREHMRIHNNDKRFVCPVCGRAFTQKCTLKGHLKVHDRKLDLDERIIQPLHSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220857;
- 90% Identity
- -
- 80% Identity
- -