Atra010203.2
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063561.1:1226032-1238720[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.019 1.3 10.2 0.1 2 23 138 159 137 159 0.96 2 14 0.011 0.74 11.0 0.3 2 23 241 262 240 262 0.95 3 14 0.19 13 7.1 0.3 3 23 270 290 268 290 0.92 4 14 0.0019 0.13 13.4 4.4 2 23 297 319 297 319 0.96 5 14 0.0013 0.089 13.9 2.5 2 23 328 350 327 350 0.96 6 14 5.6e-06 0.00038 21.4 2.5 1 23 355 377 355 377 0.97 7 14 0.087 5.8 8.2 3.2 1 23 383 406 383 406 0.96 8 14 0.009 0.6 11.3 2.3 1 21 411 431 411 432 0.94 9 14 9.4e-06 0.00063 20.7 2.3 2 23 437 458 437 458 0.95 10 14 0.0055 0.37 12.0 0.1 1 23 464 486 464 486 0.98 11 14 0.0028 0.19 12.9 0.8 2 23 493 514 492 514 0.97 12 14 0.0055 0.37 12.0 0.1 1 23 525 547 525 547 0.98 13 14 0.00058 0.038 15.0 0.7 2 23 554 575 553 575 0.97 14 14 7.6e-07 5.1e-05 24.1 1.4 1 23 581 603 581 603 0.99
Sequence Information
- Coding Sequence
- ATGGAAATACTGTGCCGATCCTGTCTACTGGCAGAACAAGATATGGTTGCGCTAGATGAGTCCTGTGTGACTAGTTATAACTTATTGACCAACTTACAGattgttttaggcgatgagatGCCACAAAATATTTGCCAGAATTGTTTTAATATGATTAAAGTTTTTATGGACTTCCGGCAAAAGGCAATTGTGTCTGAGACAACATTACGAAATATCAAGGAGaatgaacttaacaatttttgtgacaaagaagaaaatgttgAGAGTGAATGTATTAGAATTGAGTCACTTGACGACGATCATGATGACGCTTTGACGTATGAGACGATTTACTCTGGAGataatgaggaaatatgttttaaatctaCATATAAATTGAGTGACGTAAAAAAGGAACATGTACAGATGTTGCAGTGCGgattatgtaaaaaatatattcctaaTAGTGATGCACTTGAAGATCATTTGAAAGAACACAAAAGGGGAGGAAAGTGTAAACtgtgttttgaaaatataaaaataacagagTTATATGCGCATACGCTTGCACACCACCAATTTTCTATGGACGTAAAACAAGAATCAAACACATATCCAGTAATAAAATTGGAGACTTTAAACAGTGTAAAGACACGTTCAACAGTCAAAGttaaaagaaaacttaaaaatgCGAATGGGTGCATAAAACGGAACGAAGTAGCATCAGAATCTCCGATACTGAACTGTGGACTGTGCCGTCTGAAGTTTGATGACAAAGATCTCCTGTTGAACCATTTGGAGAACCATAAGACCGAGGGCATCTCAATTTGTGAAATATGTCAAGAATTTTGCAACAGTTGGCCGCAGCTATTGGGACACAGAGTGTTACATTTGCCTCCGACCCAAAGAAGTTGCCATTTATGTGACCGTCGATTCAGAACGCAGAACAATTTGGAGTTCCACTACAGAAGGATGCATTATGATGGTGAGgataaaaatttgaaatgtaagCACTGCCTCCGATCCTACGGCAGTCCTAGGAAATTGACGAAGCACTTGAATTCTGTGCACGCGCCCAAGAGATACTTCTGTGATCACTGTTCTAAAGGattcataaataaaagtaatctgCGTTCTCATCTAGCGTCGCACGGACAAGGGAAACGATATATGTGCGATGAATGCGATTTCTCCTCAAAACTGCGACAAGGTTTGAAGCACCACAAATTGAGAAAACACCAACCGGTCAAGTTCACGTGCAAAATGTGCAGCAAAATATTCATAGACAAAACTAAATACGAAGAGCACGTTTGCAAATCCAACGGCGGTGTTTGTCCCTTGTGCGGgaaggTGTTCAACAACAAGAAGTCACTCACGCGCCACTCTCACAGTCACGACGCCGAGCCGCGATACAAGTGTGGGAGGTGCGCAGCCGCATATCGCAGCCGCAACGCGCTCAGAGTGCACATTGATAGACACGACGGTGTTAAGAAACAGAGATGCGAGTTCTGCGGTGCGAGATTCTATTCTTACACTGTTCTGTTGAAACATAGGCGTGTGCACACAGgtgTTCGTCACGACGCCGAGCCGCGGTACAAGTGTGGGCGATGCGCAGCCGCATATCGCAGCCGCAACGCGCTCAGAGTGCACATTGATAGACACGACGGTGTTAAGAAACAGAGATGCGAGTACTGCGGTGCGAGATTCTATTCTTACACTGTTCTGTTGAAACATAGGCGTGTGCACACAGGTGAAAAACCGTATGTATGCAAGATTTGCAGCAGAGGTTTCACGGGGAACCACAATCTCAAAGTCCACATGCGAATTCATGGAGAAGACGTTATCGTTAAGAGGAACAAAGTCGCGGACGATTCCAAGCCAGCAAACGTACTGGAATCCTCCGTGGCTTTGATAAAATAG
- Protein Sequence
- MEILCRSCLLAEQDMVALDESCVTSYNLLTNLQIVLGDEMPQNICQNCFNMIKVFMDFRQKAIVSETTLRNIKENELNNFCDKEENVESECIRIESLDDDHDDALTYETIYSGDNEEICFKSTYKLSDVKKEHVQMLQCGLCKKYIPNSDALEDHLKEHKRGGKCKLCFENIKITELYAHTLAHHQFSMDVKQESNTYPVIKLETLNSVKTRSTVKVKRKLKNANGCIKRNEVASESPILNCGLCRLKFDDKDLLLNHLENHKTEGISICEICQEFCNSWPQLLGHRVLHLPPTQRSCHLCDRRFRTQNNLEFHYRRMHYDGEDKNLKCKHCLRSYGSPRKLTKHLNSVHAPKRYFCDHCSKGFINKSNLRSHLASHGQGKRYMCDECDFSSKLRQGLKHHKLRKHQPVKFTCKMCSKIFIDKTKYEEHVCKSNGGVCPLCGKVFNNKKSLTRHSHSHDAEPRYKCGRCAAAYRSRNALRVHIDRHDGVKKQRCEFCGARFYSYTVLLKHRRVHTGVRHDAEPRYKCGRCAAAYRSRNALRVHIDRHDGVKKQRCEYCGARFYSYTVLLKHRRVHTGEKPYVCKICSRGFTGNHNLKVHMRIHGEDVIVKRNKVADDSKPANVLESSVALIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -