Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063560.1:8778568-8793722[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0004 0.027 15.5 3.4 1 23 242 264 242 264 0.98

2 11 0.00054 0.036 15.1 6.7 1 23 270 292 270 292 0.96

3 11 0.0026 0.17 13.0 6.9 1 23 298 320 298 320 0.98

4 11 0.0011 0.071 14.2 1.0 1 23 326 348 326 348 0.97

5 11 1.7e-05 0.0011 19.9 0.6 1 23 354 376 354 376 0.97

6 11 2.4e-05 0.0016 19.4 0.1 1 23 382 404 382 404 0.98

7 11 8.4e-05 0.0056 17.7 0.4 1 23 409 431 409 431 0.96

8 11 3 2e+02 3.4 3.3 3 19 439 455 438 461 0.91

9 11 1.8e-05 0.0012 19.8 0.5 1 23 566 588 566 588 0.98

10 11 7.9e-05 0.0053 17.8 1.8 1 23 646 668 646 668 0.96

11 11 4.3e-05 0.0029 18.6 4.9 1 23 678 700 678 700 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0004	0.027	15.5	3.4	1	23	242	264	242	264	0.98
2	11	0.00054	0.036	15.1	6.7	1	23	270	292	270	292	0.96
3	11	0.0026	0.17	13.0	6.9	1	23	298	320	298	320	0.98
4	11	0.0011	0.071	14.2	1.0	1	23	326	348	326	348	0.97
5	11	1.7e-05	0.0011	19.9	0.6	1	23	354	376	354	376	0.97
6	11	2.4e-05	0.0016	19.4	0.1	1	23	382	404	382	404	0.98
7	11	8.4e-05	0.0056	17.7	0.4	1	23	409	431	409	431	0.96
8	11	3	2e+02	3.4	3.3	3	19	439	455	438	461	0.91
9	11	1.8e-05	0.0012	19.8	0.5	1	23	566	588	566	588	0.98
10	11	7.9e-05	0.0053	17.8	1.8	1	23	646	668	646	668	0.96
11	11	4.3e-05	0.0029	18.6	4.9	1	23	678	700	678	700	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACGCCGAGCAATGTCTCGGGCTTCGGGTATTCATGGGGCTTTGCAAGCTCCGCGGACCCTACCAAAGGCGAGGTGGATACGCCTAGCAGTTTAAGTTACACCATCGGAAATAGTGTGTCTCCTGAGACAACTATGACGGTAATGTCCCACAAAACGCCACAAGTACAAGAGAAAGTGGGCAATGTCACCGTGGCCTCGGTGTCTAATACGGCAGCTCAGGTTACGCGTGTTGTGACCACTGGGACTCCAGTGCAAGGCCGGAGAGCCATGTTTGTGTTCAATGATACACCTGTGCATACCATAAACAGGGTGTCACAACAGAACCAGACTGCCACAATACATACTGCGAACATTGGCACAAAAACAATCATGACACCACTAGGTCCTCTTCAGTTGACTGCAGAAGAATGCAACGAGATCCTGATGAAGCGGGCTCTTCAGGCTCAAGGGATCTCCACTCCGTCTGTTATAGATGCATCCCAGTTGAACCATACATTGTTGAATGGTACTATAAAGACTATCAATGAGGCGCCTGCTCAACAAACAGAGGCGATACAGACGAACACAATTCAACAGCACCACCTCTTACATACTAAACAAGAACCGGGAACTACCAATAATTCTCCtaagACTGTGTATTCACAAACAGAGCTGATGAACACCAACACGGTGATGACCACGGTGGCCCCCGCGGCACCCAAGGAACGGCCATATTCTTGTGATGAATGTGGCAAGTCTTTTCTGTTGAAACACCATCTCACAACTCATGCAAGAGTTCATACAGGAGAGAGGCCTCACGTGTGCGTACATTGCGGCAAGGCATTCGCCAGGAAGCACTGTCTCAATACACATCTGTTGCTGCACTCCGCCGACCGGCCGTACCGCTGTCACGAATGCAAGATGGCGTTCACGCTGAAACATCATCTGGTTACACATTCACGGgTCCACAGCAGAGAACGTCCGTTCGTGTGCGGCGAGTGTGGTCGGGGGTTTCCCTTGAAGCGACATCTGGTGACGCACAGCAAGTACCACGCGGGGGAAAGGCCTTATGTCTGCGGGGATTGTGGCGAGAGCTTTGCGCAGAAGGAGCACCTGGTGATGCACAGCCGCTTCCACGGCTCGCTGTCGCCGTTCGTGTGCGGCGACTGCGGGCTGGCGTTCGCGCGCAAGTTCCAGCTCGTGAACCACGGCCGCGTGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGCAAGGAGTTCCTGCAGAAGCGCACGCTGGTGGCGCACATGAAGATTCACACAGGCGAAGGCGTAGTAGCTTGCTTAGAATGCGGGGAAGCCTTCAAATGTAAAGAAGAGTTGACACAACACTGCAAACTCACGAGGCATTGTCTCACCACGGCGACAGCGCAACAAAcacagcaacaacaacaacagcaacaacaacaacaggcGCAACAACAGGCGCAACAACAAGCCCAACAACAGGCTCAGCAGCAGGCACAACAACAAGCTCAGCAACAGGCGCAACAACAGGCACAACAACAAGCACAACAACAAGCGCAACAACAAGCGCAACAACAGgcgcaacaacaacaacaacaacagacTGTGATAAAACAGGACGATTTCAAGCCGCAAATCGTACAGGTCATTGGTGCCGACGGCCAAATAGTGAGTGAAGCGAAATCGTCTCCGCAATATGTGTGTCCGGAGTGCGGTTCTTGTTTCAACACGAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCGCCGCTCAatcaACCCATCCATACAATACTATCATCGAATCCTAGTAGTGTTGTACATACGCAAGTTATAGCTACGAATATAGCGCAACCCCGGCCTAAGATACACTTCTGCGTGGACTGCGGTAAAGGGTTCGCGGCGAAACATGGACTACAGGCACATCAAAGGAGACACCCGGACGGTAGCTGTACGCTGAGGACGCACGTGTGCAACCAGTGCGGGAAGGCGTTCTTCCAGAAGAACCACCTCATGCTGCATCAGAGACAACACATGGATTTACCGCCTAGAAATACGCAAGCGCAACAGCAAGCGAACCAACAGGCGCAACAGCAGGCCCAACAGGCGGCGCAACAAGTCGTGCAACAAGTTCAGCAACAAGTACAACAGCAGGTGCAACAGGTCCAGCATCAGGTGCATCAGAACAGGCTCGAGTTGCAGGAGGAACAGCAGCCTACGCATATACAAGTGGTAACAAACAGATCAGGGCAAGTGATCGGCAACCAGATAGTGGTGGGCGGCGTGGGCGGCGTGGGCAGCGTGGGCGGCGTGGGCCGCCGGCTGGTGGCGCCGCAGCTGCACATCATCGGCCGCGACGGGAAGGCCATAGCCCATCTCGCGCACAACAAGCACAACAGACATACAAATAGCAGTGACGTGAAAGAAGTAACAAGCGGCCTGGTCCTCTCAACGGGACGAGGCACAGAGCTGATCAAGTATGAGATCTCCATCCCCCCGCCCACGTCAGTGGTGCAAGTGCAGCAGTTGGACTGA
Protein Sequence: MCMPTPSNVSGFGYSWGFASSADPTKGEVDTPSSLSYTIGNSVSPETTMTVMSHKTPQVQEKVGNVTVASVSNTAAQVTRVVTTGTPVQGRRAMFVFNDTPVHTINRVSQQNQTATIHTANIGTKTIMTPLGPLQLTAEECNEILMKRALQAQGISTPSVIDASQLNHTLLNGTIKTINEAPAQQTEAIQTNTIQQHHLLHTKQEPGTTNNSPKTVYSQTELMNTNTVMTTVAPAAPKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCVHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRERPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCGDCGESFAQKEHLVMHSRFHGSLSPFVCGDCGLAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLECGEAFKCKEELTQHCKLTRHCLTTATAQQTQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQQTVIKQDDFKPQIVQVIGADGQIVSEAKSSPQYVCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAPLNQPIHTILSSNPSSVVHTQVIATNIAQPRPKIHFCVDCGKGFAAKHGLQAHQRRHPDGSCTLRTHVCNQCGKAFFQKNHLMLHQRQHMDLPPRNTQAQQQANQQAQQQAQQAAQQVVQQVQQQVQQQVQQVQHQVHQNRLELQEEQQPTHIQVVTNRSGQVIGNQIVVGGVGGVGSVGGVGRRLVAPQLHIIGRDGKAIAHLAHNKHNRHTNSSDVKEVTSGLVLSTGRGTELIKYEISIPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640726;
90% Identity: iTF_01220861; iTF_00013349;
80% Identity: -