Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063551.1:4882895-4884718[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 7.4 7.9 2.8 1 23 177 200 177 200 0.89

2 10 0.0099 0.66 11.2 2.8 1 23 206 229 206 229 0.96

3 10 1.4e-05 0.00095 20.1 3.5 1 23 235 257 235 257 0.96

4 10 2.4e-07 1.6e-05 25.7 3.7 1 23 263 285 263 285 0.99

5 10 4.6e-05 0.0031 18.5 0.1 1 23 291 313 291 313 0.97

6 10 0.00012 0.0082 17.2 1.5 1 23 319 341 319 341 0.98

7 10 8.8e-05 0.0059 17.6 1.0 2 23 437 459 436 459 0.95

8 10 3.8e-05 0.0025 18.8 1.7 1 23 465 487 465 487 0.97

9 10 2.9e-05 0.0019 19.1 2.5 1 23 494 516 494 516 0.96

10 10 0.00071 0.047 14.8 0.1 3 23 525 545 523 545 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	7.4	7.9	2.8	1	23	177	200	177	200	0.89
2	10	0.0099	0.66	11.2	2.8	1	23	206	229	206	229	0.96
3	10	1.4e-05	0.00095	20.1	3.5	1	23	235	257	235	257	0.96
4	10	2.4e-07	1.6e-05	25.7	3.7	1	23	263	285	263	285	0.99
5	10	4.6e-05	0.0031	18.5	0.1	1	23	291	313	291	313	0.97
6	10	0.00012	0.0082	17.2	1.5	1	23	319	341	319	341	0.98
7	10	8.8e-05	0.0059	17.6	1.0	2	23	437	459	436	459	0.95
8	10	3.8e-05	0.0025	18.8	1.7	1	23	465	487	465	487	0.97
9	10	2.9e-05	0.0019	19.1	2.5	1	23	494	516	494	516	0.96
10	10	0.00071	0.047	14.8	0.1	3	23	525	545	523	545	0.92

Sequence Information

Coding Sequence: atggaagaTTCCTACATTATCGCCAATTTTCATGCATTGTGTCGCCTGTGTCTGAACAAAAGCACCCTCTCTGTCTCGATTTTTGGTGCAGCACCCGACGACGAAACCAATGTTTCTTTAACCTCTAAAATATCTGATTGTTTCGAACTGCAGATAGATCCTAATGATGGCCTGCCTGGAAATATCTGTTACAAGTGCCTGTTTGAAGTAGACAAATGCTCCAAATTCAAACTCCAGTGTATACAGAATGAAAACAGACTGAGGCAAATTACAAATCAAGCTGGAGAATTGGATAACTCAAATTCTTCGgaagttaataattattacaataatacgAAAGAATCTACAAGACCGAAGCCTGAAGAATATTTTGTCGGGGACAGTGTTGTCATGGTTGTAGATCCAAGTCTAGACTATCACTCCGAAGAGTCAGATGATTCTGACAATGCTGAACAAGTTGAACATGAAACTGAAATGGAAAACATTCCTGAGGGTGACCCAATGCCAgaaacatttttcaaaaatgtgTTTATGTGTCAATACTGTGACCAAGCTTTTGTATCACAAGAAAAATGCAAAGACCATGAACAAAATTACCATGATGCCAACTTACCATACAAGTGTGTTGAATGCAGTCTAGTTTTTGCAGAGCGAAGTCAATATGTGCACCATACTAAACATGTGCATGGTAATGATAAACCTTACCACTGCCCTGAGTGTGAAAAATGTTTTGGTAGACGATCAGATTTGAGGAAGCATTCAATCGTCCACACTGGCATTAGACCTTACCAATGTCAGTATTGTTTCAAAAGTTTTTCACGGAATACTAATTTGAGTAAACATCTTCGTATTCATGCTGGCCACAAACCACATGTCTGCCCCTTATGCCCTAGAAGTTTTGTAGCAAGAGGGGATCTGCAACGGCATGTAATAGTTCATTCAGGAATGAAGCCATTTCGCTGCCAAAAGTGTCCATTGTCATTTGGAAGAAGAGACAAGCTCCTTAAGCATGAAATGAAACATGGCCATGTAAGCCCTCATCACAAGGCTGATGAATATGGTAATGACCAGGACACACATGATATGGTAGTAAGTGTTAATCCTTTCAGCAACCTAATGACTTCACCACCTCAACTAAATCCTGATTCGTCTAATATGGACTATGAACTACCTAGAGTTCCAGACCATATTACTGGAGAAAACAGTTTTATGAATCAAGCCTCCAAAAACCCTTCTACCACTggtaaacaaacacaaaattcaCCTACAAAACTGAAATTAGGCAGTAAAAACAGACCAAAGAACATTAAATGTCATCAGTGTCCCAAAAGATTTTCTTCACTGGATGCCTATAAGACTCATGTTTCTATAGCTCATGTAGGTTCCAGAGGTTTTCAgtgtaaagtttgttttaagAAGTTTGCGAGAAAACGTGATTTGGATCGACATACAGCAATTCATTCTGGGGTGATGAAACAATTTTCTTGCAGCCAATGTGACAAGAAGTTCACAAGGAAAGACAAGCTAGACAAACATGAAGAGTCTCATGAGAGCACAGTTGTGAATTTGCCTTGCATTGAGTGTGGTGCCACTTTTGAGAAAAAATCAGATTTAGTTGCTCATCTCAAATCTCATTTCACAGATCAGTATGACGAAAAGAACTCAGTATCTcagattaaaaaagaagaagaatctgACTTCCAAGTGGAAGATAGCTATTATGATTTAGAGACTTGA
Protein Sequence: MEDSYIIANFHALCRLCLNKSTLSVSIFGAAPDDETNVSLTSKISDCFELQIDPNDGLPGNICYKCLFEVDKCSKFKLQCIQNENRLRQITNQAGELDNSNSSEVNNYYNNTKESTRPKPEEYFVGDSVVMVVDPSLDYHSEESDDSDNAEQVEHETEMENIPEGDPMPETFFKNVFMCQYCDQAFVSQEKCKDHEQNYHDANLPYKCVECSLVFAERSQYVHHTKHVHGNDKPYHCPECEKCFGRRSDLRKHSIVHTGIRPYQCQYCFKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVARGDLQRHVIVHSGMKPFRCQKCPLSFGRRDKLLKHEMKHGHVSPHHKADEYGNDQDTHDMVVSVNPFSNLMTSPPQLNPDSSNMDYELPRVPDHITGENSFMNQASKNPSTTGKQTQNSPTKLKLGSKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHVGSRGFQCKVCFKKFARKRDLDRHTAIHSGVMKQFSCSQCDKKFTRKDKLDKHEESHESTVVNLPCIECGATFEKKSDLVAHLKSHFTDQYDEKNSVSQIKKEEESDFQVEDSYYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00648388;
90% Identity: -
80% Identity: -