Atra011932.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063563.1:7710421-7718342[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.021 1.4 10.1 3.2 1 23 272 294 272 294 0.96 2 12 7.7e-05 0.0051 17.8 1.8 2 23 302 323 301 323 0.96 3 12 0.0022 0.15 13.2 1.6 1 23 327 349 327 349 0.98 4 12 0.0013 0.087 13.9 0.9 1 23 354 377 354 377 0.98 5 12 0.0024 0.16 13.1 0.1 1 23 381 404 381 404 0.95 6 12 0.0069 0.46 11.6 0.2 2 20 425 443 425 449 0.93 7 12 0.00015 0.0097 16.9 0.3 3 23 459 480 458 480 0.97 8 12 0.19 13 7.1 1.0 3 23 501 522 500 522 0.95 9 12 1.1e-05 0.00073 20.5 0.5 1 23 533 555 533 555 0.99 10 12 6.7e-05 0.0045 18.0 6.0 1 23 561 583 561 583 0.99 11 12 0.00013 0.0085 17.1 1.9 1 23 589 611 589 611 0.97 12 12 1.5e-05 0.00099 20.1 0.3 1 23 617 640 617 640 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTGATAAAGTTTGTAGGATATGTCTCATAACGGGTGTAAAAATGTATGACGTCCAGAGTTatcctataaaaaaatacttagaggCCATAGTTGGAGTTAATtctcTGGGAGAAATGTTACTACCATCTTCCATTTGTTTTGAGTGCCAAGCTCTGactagaaaatattatttcttcaaGGAGCGGTGTATGAATGGACAGGGGGCTCTACTTGATATGCTGAGTATATATGGGAAGATAAATGTGGCACAACTGCCACAATTGAGGGAATCCTTCAAATTGAAATCTACTTTGATTATTGACAATCAGACCCATTTCATTGACTTCTGCTATGAGGAGATCAGTTTCAATGAATCACAGAAGGAAGAAGTTAAAGTGGAACCATTTGAAGATGACACCCTGGACTTCACAGAAGCACTGGAGGCTGATGACTTGCTGgaaaccataaaaaaagaagatcATAAATTTGAAGTGTTCCTCAATTCACCCATGTCAAGTGATGATGAGCCACTTTCCACACATAAGAGAAATAAGACTGAAAAGGCAGAGGTGATGATAGAAGCCGATGCGCCAGTAAAGCGCAAACGTGGGCGACCGCGAAAAGGAGAAGGTAAAGCAAATATTGAACCTGGTGATCAGCCCCCCAAACGTAAATTCAAGCGCAGAGTCACTGAGAACACTGGCGGAATCTCTGAGGAGGAAGACTTTGATTTGGAGCAATTTGtggaaattattaatttaactCCTGAGGAGCAGCTgcaagaaatagaaaaaagaaaggaGTCTTCAAACTATCAGAATTCAGCATTCCAGTGCAACTTCTGCTACAAAGGGTTCATTAACTTGCAGGCTTTTAACCACCACAGCGCGAAACATGACCCCAGCGCGGGCAACATAAAGTGTCCCATTTGCAAGATCCGTTTCAAGAACAAACGGGCATACACGAAACATCAAACTAATCACGAGAAGAAATACAAGTGTAAATCGTGCCCTTACGTCTCCAAGACGTCaaCGCAAGCGAAGCAGCACCAGAGGTGGCATAAAGGAGTGACGTACAAGTGTCAGTATTGTGACGAGATCTCCACCAAATGGACGTCGTATTTGAGCCACGTCCGCATAAAGCACCCATCGGAGTTCATTTGCGGAGTTTGCGGATATTCGTTTGTGAGCCGTCTGGGGCTCGCCATGCACAGAACTATGATGCACAAGGGGGTACAGGATAACCAAGAACCCGAAGGTGATCTCAAGACAGAAGAATCTAGGCCTTATTGCTCAGTGTGCAACATTCAATTTGTCTCCGAGGAGGCGTTCAAGCGGCACATGGTCATGTCCGCGAAACACACCAAGAGTAATGAGGATAGTCACGGCTGTAAAACGTGCGGCGAGAGTTTCCCAAGCGCGGAAGCACTCCGAGTTCACCACCGCGCCACCCACGCTCGGAAACGACCCAAGAACTACGGCAAGAGACCGCCTCCCTACTCCTGGCCCGCCCCTTGTAATCATTGTGGCGAGCACGTGGCCAACGGGCGCGCGTACTGGACGCACTTCCGGCGCGCGCACCCCGGCCTGCCCTACCCCATCCGCAAGGACTACGTCTGCGACGTCTGCGGGAAGAGCTTCCGGGGCAACGCGTTCCTAGTGTACCACAAGCGTACGCATACGGACGAGCGAGCGTACAAATGCTCGCTCTGTCCGAAAGCGTTCCACAACCGCACCAATCTGCACATGCATCAAAAAACACATTCAGACCATCGGCCACACCCCTGTTCTGTCTGCTTCAAGGCCTTCAAGTCTAAAGGAGCCTTGGACAGGCATTTCCGGAGCCACACGGGCGTGAAGCCGTACGAGTGCGAGGTGTGCGGCAAGGCGTTCAACCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTGCGCCAGCCCGCGCCCTACGTCAGCCGCGCGCGCGACCGCCGCCACCGCCCCAACGCCTAG
- Protein Sequence
- METDKVCRICLITGVKMYDVQSYPIKKYLEAIVGVNSLGEMLLPSSICFECQALTRKYYFFKERCMNGQGALLDMLSIYGKINVAQLPQLRESFKLKSTLIIDNQTHFIDFCYEEISFNESQKEEVKVEPFEDDTLDFTEALEADDLLETIKKEDHKFEVFLNSPMSSDDEPLSTHKRNKTEKAEVMIEADAPVKRKRGRPRKGEGKANIEPGDQPPKRKFKRRVTENTGGISEEEDFDLEQFVEIINLTPEEQLQEIEKRKESSNYQNSAFQCNFCYKGFINLQAFNHHSAKHDPSAGNIKCPICKIRFKNKRAYTKHQTNHEKKYKCKSCPYVSKTSTQAKQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRIKHPSEFICGVCGYSFVSRLGLAMHRTMMHKGVQDNQEPEGDLKTEESRPYCSVCNIQFVSEEAFKRHMVMSAKHTKSNEDSHGCKTCGESFPSAEALRVHHRATHARKRPKNYGKRPPPYSWPAPCNHCGEHVANGRAYWTHFRRAHPGLPYPIRKDYVCDVCGKSFRGNAFLVYHKRTHTDERAYKCSLCPKAFHNRTNLHMHQKTHSDHRPHPCSVCFKAFKSKGALDRHFRSHTGVKPYECEVCGKAFNQSNSRKLHVRTVHLRQPAPYVSRARDRRHRPNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -