Atra019370.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063575.1:5561765-5576176[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.3e-07 5.5e-05 24.0 0.9 1 23 239 262 239 262 0.97 2 12 0.016 1.1 10.5 0.6 1 23 269 291 269 291 0.94 3 12 0.014 0.96 10.7 3.3 1 23 295 317 295 317 0.96 4 12 0.0022 0.15 13.2 3.7 1 23 322 345 322 345 0.96 5 12 0.0014 0.092 13.9 0.2 3 23 352 373 351 373 0.97 6 12 0.62 42 5.5 0.0 2 21 382 401 381 402 0.93 7 12 0.12 8.1 7.7 0.1 3 21 410 428 409 431 0.89 8 12 0.00014 0.0095 17.0 1.6 1 23 444 467 444 467 0.92 9 12 2e-05 0.0013 19.6 0.8 2 23 528 549 527 550 0.94 10 12 8.3e-07 5.5e-05 24.0 2.2 1 23 556 578 556 578 0.98 11 12 2.2e-05 0.0015 19.5 0.2 1 23 584 606 584 606 0.98 12 12 0.00042 0.028 15.5 1.6 1 23 612 635 612 635 0.97
Sequence Information
- Coding Sequence
- ATGGAACAATATCTCGTTTGTCGTGGGTGCCTGGCAGTGCACGAGGAGTCTCAATATGTTCTCAGCACCAAAACTGAAGAGTCTTACGAGAGTCTACTTGGAATACCaTTAACACCGCTGAACGGGTTCCCGGAATACTTGTGCGTGTTCTGTCACCGCACCCTGCACAGGTTCGCCGCGTTCAAAGCCAGGTGCCTCCAAGTGGTGGACGTGCTTCTCAGTGCGCAGACGCAAGGCGGATTGataACCAAAGACTATGTACAGTCTTTATCGTCGCATCATCCAGAGCTTAGTCATCGCTTTGGTGAAACTAAAACCCTCACTTTAGACATTAACTCAGAAACAATACAAGTTTTCAAACACGAACCAAAAGATATGTCTAAAATCTTGTTTAAGATCGACAAGGTGGAACCGAGCGACGAGTACATAGTTCTAGAAGATGACATATTAGACGAAGAGTTATTGAAAGATGATTTGTTGGAAGTGAAGCACAGAACTCACGAAGTGTACATTAAAGATTTGAAGCCAGCTAACAGAAGAATTAAACACTCGAAACCGAAAAATCCTCTTCGGTCGGGCAAAAAGAAGAAAGTGGCAAGAAGTGATAGTCAAATTGTGACAGAGTATGCCTTATCTGCTGGCTTCGATGTAAGATTCCTCTCTCACGCCGAACAGGTGAGGGAAGTGGAAGAAAAGAAGAGTGTTAATTCAACATTTAATTGTAAACTATGCGGCAAACCATTCAGAGATCCAGAAGCTTTGCGCAGACATACTAAGAAGTATCACGTTCTGAAACCTGACAGTTTCATGTGTGATATATGCTCATGCGTTTTTGCCACCAAAAGGGGTATAAGAGTGCACGTGACGGGTCATAGTTGGGTGTTCACGTGTAAAACATGCGGTTTTAAAACTAAACAGCGGCCTGTTTTGAGAAGACACCAGTTTTACCACATTGGAAAGACATTCCAGTGTCAATATTGTGATAGAGTGTTTGATAAGCATGCGACTTATTTCTCTCACGTGCGTTTCTTGCATGCCAATATGCTGCCGTTTTGTGAATACTGCGGTGAGTTCTTTAACAGTGCGAAAGGTGTTGATGCTCACATGAAGATGAGTCATGATGTTTTAGAGGAATTCCCAATTGTGTGCCCGAgttgtgatggaagatttgagAGTGTTACAGCTTTGGATCGGCATGTGAAGGTTAAAGGCTGCGGCGGCGCCAACTGCCCGCGCTGCGGCGACACGTTCCCGGGCGCGCCGCAGCTGAAGCGGCACGCGGTGCACGCGCACGCGGCGGGCGgccgggcggcgcgcgcgcacggcCTGTTCACTTGCTGCGAGTGCAGTAAGCCGTTCACGAACGCGATGTACCTGAAGCGGCACTACGCGGCCGCGCACAGCGGCCGCCAGCCGGCGCCGCGCGGCCGCCCCGCGCGCTCGCTAGATAAGACAAAATACAAATTGCCGACGCAGCTCCCCACCCGCAAGTGGTCGCTGGTGGGGTCAGGCGACGTCACCATTGGAATTCTGGAAGACGTTAAGGAGAAACAGACAGACGAACATACACCCAACCGGGTCATGTGTGAAGTCTGCGGGAAGTATGTTAAGACACCCTCGGAGCTCAAATACCACCAGCAGACTCATCACTCGTCTGTCAATAACTTCGTCTGTTCGCACTGCGACAAGGGGTTCAAGAGGAAGGATCTTCTGCAGAGTCACGAGCGCGTTCACACGGGCGAGCGGCCGTACCCGTGCGAGCAGTGCGGGAAGGCGTTCAAGACCTACGCTGCGCGGAGGAGGCACTTGTTGgTGCATACAGGTGAGCGTAGACACGTGTGCTCTCTCTGCAACAAGAGGTTCCAGCTCTCCAGCAGCGTGAAGTGGCACATCAAGACTGCGCATCTGAATTTGCCGTGGCCGCAACGAAAAAAGGAACGGAAAAAAAAAGACGCGACGAaaagttttgaataa
- Protein Sequence
- MEQYLVCRGCLAVHEESQYVLSTKTEESYESLLGIPLTPLNGFPEYLCVFCHRTLHRFAAFKARCLQVVDVLLSAQTQGGLITKDYVQSLSSHHPELSHRFGETKTLTLDINSETIQVFKHEPKDMSKILFKIDKVEPSDEYIVLEDDILDEELLKDDLLEVKHRTHEVYIKDLKPANRRIKHSKPKNPLRSGKKKKVARSDSQIVTEYALSAGFDVRFLSHAEQVREVEEKKSVNSTFNCKLCGKPFRDPEALRRHTKKYHVLKPDSFMCDICSCVFATKRGIRVHVTGHSWVFTCKTCGFKTKQRPVLRRHQFYHIGKTFQCQYCDRVFDKHATYFSHVRFLHANMLPFCEYCGEFFNSAKGVDAHMKMSHDVLEEFPIVCPSCDGRFESVTALDRHVKVKGCGGANCPRCGDTFPGAPQLKRHAVHAHAAGGRAARAHGLFTCCECSKPFTNAMYLKRHYAAAHSGRQPAPRGRPARSLDKTKYKLPTQLPTRKWSLVGSGDVTIGILEDVKEKQTDEHTPNRVMCEVCGKYVKTPSELKYHQQTHHSSVNNFVCSHCDKGFKRKDLLQSHERVHTGERPYPCEQCGKAFKTYAARRRHLLVHTGERRHVCSLCNKRFQLSSSVKWHIKTAHLNLPWPQRKKERKKKDATKSFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -