Atra012839.2
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- ZFX
- Assembly
- GCA_032362555.1
- Location
- CM063565.1:519825-523986[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.7 5.1e+02 2.1 2.9 1 23 171 196 171 196 0.88 2 15 1.5 1e+02 4.3 3.5 1 23 243 265 243 265 0.96 3 15 0.79 53 5.2 0.0 6 23 277 295 277 295 0.95 4 15 0.5 33 5.8 0.1 3 23 306 327 305 327 0.92 5 15 4.3e-07 2.9e-05 24.9 1.7 2 23 350 371 350 371 0.97 6 15 3e-05 0.002 19.1 2.0 2 23 379 401 378 401 0.95 7 15 0.061 4 8.7 1.9 1 23 407 429 407 429 0.96 8 15 5.2e-05 0.0034 18.3 0.7 1 23 435 457 435 457 0.97 9 15 0.0034 0.22 12.6 3.6 1 23 608 630 608 630 0.98 10 15 0.00045 0.03 15.4 2.0 2 23 637 659 636 659 0.92 11 15 3.5e-06 0.00023 22.0 2.1 1 23 665 687 665 687 0.97 12 15 1.2e-07 8e-06 26.6 1.1 1 23 693 715 693 715 0.99 13 15 0.0014 0.091 13.9 0.1 1 23 721 743 721 743 0.97 14 15 0.016 1.1 10.5 2.6 1 23 749 771 749 771 0.94 15 15 0.0023 0.15 13.2 2.7 1 23 777 800 777 800 0.95
Sequence Information
- Coding Sequence
- atgaacAACGAGACGGAACAAATATTTCTGGTGAATGCTGCGTCTAATCCCGCTACCATACACAAAGACGCCATTCCCGGCGCGACGCTAGTCAACCTCGAGAGTGTGCAAGACTTCTCAACAGTATGCCGGACGTGTGCCACTATCACGGAGTTTGTGATCCCCATCTTCGAGGGAGAGGGTCTCCAGAACAACCTGGCTGACAAGATACACAAGCATCTTCCCATACAAGTGCTAGAGGACGACGCGCTGCCCCGCGTGGTCTGCTACCAGTGTGCCAGTACGCTCCTGGCGTGGCACGAGCTGGTCAAGTGCTGCGTACAGGCCGATGAGGCACTGAGAGCGAGACTGGCTCAGATGCAGCAAGCAACGGCTGCGACACTTTTGGAATCAGAATGGGGCTCATCAAAAGGtgaacaaaataaATCGGACTCACCGTATTACGAAATAGTTAACAATGTTCTCGCTGAGTATCTGAAATCGATAGATATGGACGGAGAGATCTCAAACTACATCTGTCACAAATGCGTGCGCCATGAACCGTTGTCTGACCTCATGAGCTTAGCTGAACACATGCGCAAAAAACATTCGTTAATAGACAAAAGGTCTATCAAAGAATTTATACAAGATAATATTGCGTTTGAAGAGACTCTGAATTCAGATAATACCGATAAAGATGCCGATTCCGAAGTAGAAGTTGATAATGTTGAAGAAAATTTGCCAAATTTCTTTTGTCCGTTTTGCAATAACATATTCTCTTCGACCACGCGTCTCATCTGCCATCTAAACACGCACATCGAAGTCTGCATAGATAAAGGAGTGACCTGTTGTGATacagtttataataataagaagGCTTTCGTCGTTCACTTGCAAGAAGATCACGTCAAAAAATCTGGAGACGTTAGCGATTTGTGCAGGAGTTGCGGTTACCAAGCTTCGGACGCGGGCGATCTACGGTCACATGTCAACGATCAACATTACACGGAGGAAGACACGAACGATAAGAAAGAAGCGAGTGCTAAGAACCAGAAATATATTCCGGCCGTCTGTCCTGAatgcaataaaacattttccaaTAAATACAACATGTTCACACACATGAAAAGCCACAGTGCACTCAAGGATTCGGTCCGTTGCGATCAATGTGGCAAGACTTACAGCAACCGAGGGAATCTGATGTATCATCTGAAACACTCGCACATCGGCGTAATGCACCACGTCTGTCCGTGCTGCGGAGAAAAATTCCCGACGCGGAGATCTCGGGACGTGCACATTCGTATACACACGGGATACAAGCCCTTCAGGTGCTCCGAGTGCGGGAAGGCGTTCAGAGCGAAGAACACGCTGGACAGACACACGGACATGCATTTAGATATAAGGAAATACGCGTGCCACGTTTGTCCGAAGAGATGGCTCGCCGGCCCCGGCAGCCCCGCTGACGAGCCGGACACGGGCCAGAGTGATGAGGAAACTATATGCAAAGAAAAATATCGCGAGGAAGATGATCTGAAAACCAAAGAGGATGATGATGAACCACTGTCCAACGTGGCCTCGAGGAAGTCTAATGACGCTTACAATAAGTTTTACAGTGCCTTAGTTAACTTTAGAAACCATTTCTTCAACGATCACGATAAGTGCAAGTATCCAGATTTCACAGACTCCAGCGACTCGGAAGTGGCTACAGATGTTGATagcaatgaaataaatttggACAGTTTCGACGATCTGACACAAAGTAACATGCGCAAAGACAAAATGGATGAAGACACTAGACTAGAACTGAGTCAAGCTCAAGTGAAAATAAACGGGAAAGTGTACTATACATGCAAATTGTGCGGAAAGAATTTAAGCTCGTCACACACTTATGTCTATCACAAGCGGATTCACACGGGCGAGCGTCCTTGCGTGTGCCATGTTTGCGGAAAGCAGTTTCGGGCGCCGAACGGTCTCCAGCGCCATCTGACGGAGACGCACGAGCGTTTACGCCGGCACTCGTGCCAATACTGCCCGAAGAACTTCGCCAACGTGCAGAATTTGAAGCAGCACATGCGCATCCACACCGGCGAGAGACCGTACGTGTGTCCGCAGTGCGGGAAGCGATTCACGCAGAGCGGCTCCCTGCACGTTCACGTGCGAACTCACACGGACCACTTCCCGTTCGATTGCGCGGAGTGCGGGGCGAAGTTCCGTTTGCGGGCGGGGCTGGCGCGGCACCGCCTGAAGCACAGCGGGGAGCGGCCCCACGCGTGCGGAGCCTGCCAGGCGGCGTTCCGCCACAAGCACGAGCTGACGGCCCACCGCGCCTCGCACTCGGACGCGAAGCCCCACGCCTGCGGCTCGTGTGGCGCCGCCTTCAGACAACGCCGCGCTCTCAGACACCACACCAAAAGAATGCATGAAGCTGAAGCTACCGGAGATATAACGCATACCCTCGTCTATAATCAAGACCCACAGGCGCTACACTATTGA
- Protein Sequence
- MNNETEQIFLVNAASNPATIHKDAIPGATLVNLESVQDFSTVCRTCATITEFVIPIFEGEGLQNNLADKIHKHLPIQVLEDDALPRVVCYQCASTLLAWHELVKCCVQADEALRARLAQMQQATAATLLESEWGSSKGEQNKSDSPYYEIVNNVLAEYLKSIDMDGEISNYICHKCVRHEPLSDLMSLAEHMRKKHSLIDKRSIKEFIQDNIAFEETLNSDNTDKDADSEVEVDNVEENLPNFFCPFCNNIFSSTTRLICHLNTHIEVCIDKGVTCCDTVYNNKKAFVVHLQEDHVKKSGDVSDLCRSCGYQASDAGDLRSHVNDQHYTEEDTNDKKEASAKNQKYIPAVCPECNKTFSNKYNMFTHMKSHSALKDSVRCDQCGKTYSNRGNLMYHLKHSHIGVMHHVCPCCGEKFPTRRSRDVHIRIHTGYKPFRCSECGKAFRAKNTLDRHTDMHLDIRKYACHVCPKRWLAGPGSPADEPDTGQSDEETICKEKYREEDDLKTKEDDDEPLSNVASRKSNDAYNKFYSALVNFRNHFFNDHDKCKYPDFTDSSDSEVATDVDSNEINLDSFDDLTQSNMRKDKMDEDTRLELSQAQVKINGKVYYTCKLCGKNLSSSHTYVYHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERLRRHSCQYCPKNFANVQNLKQHMRIHTGERPYVCPQCGKRFTQSGSLHVHVRTHTDHFPFDCAECGAKFRLRAGLARHRLKHSGERPHACGACQAAFRHKHELTAHRASHSDAKPHACGSCGAAFRQRRALRHHTKRMHEAEATGDITHTLVYNQDPQALHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -