Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063564.1:8195553-8198573[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6e-06 0.00017 22.4 3.5 1 23 216 238 216 238 0.99

2 11 9.7e-06 0.00065 20.6 5.3 1 23 244 266 244 266 0.98

3 11 5.4e-05 0.0036 18.3 1.6 1 23 272 294 272 294 0.98

4 11 0.015 1 10.6 7.6 1 23 301 323 301 323 0.98

5 11 0.00016 0.011 16.8 5.9 1 23 329 351 329 351 0.99

6 11 3.7e-06 0.00025 22.0 1.4 1 23 357 379 357 379 0.98

7 11 1.5e-05 0.00098 20.1 4.4 1 23 385 407 385 407 0.99

8 11 3.5e-05 0.0023 18.9 2.2 1 23 413 435 413 435 0.98

9 11 4.1e-06 0.00027 21.8 3.4 1 23 441 463 441 463 0.99

10 11 0.00021 0.014 16.4 9.3 1 23 469 491 469 491 0.98

11 11 0.0018 0.12 13.5 3.0 1 23 497 519 497 519 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6e-06	0.00017	22.4	3.5	1	23	216	238	216	238	0.99
2	11	9.7e-06	0.00065	20.6	5.3	1	23	244	266	244	266	0.98
3	11	5.4e-05	0.0036	18.3	1.6	1	23	272	294	272	294	0.98
4	11	0.015	1	10.6	7.6	1	23	301	323	301	323	0.98
5	11	0.00016	0.011	16.8	5.9	1	23	329	351	329	351	0.99
6	11	3.7e-06	0.00025	22.0	1.4	1	23	357	379	357	379	0.98
7	11	1.5e-05	0.00098	20.1	4.4	1	23	385	407	385	407	0.99
8	11	3.5e-05	0.0023	18.9	2.2	1	23	413	435	413	435	0.98
9	11	4.1e-06	0.00027	21.8	3.4	1	23	441	463	441	463	0.99
10	11	0.00021	0.014	16.4	9.3	1	23	469	491	469	491	0.98
11	11	0.0018	0.12	13.5	3.0	1	23	497	519	497	519	0.98

Sequence Information

Coding Sequence: ATGGAATCCCAAATAAATGCAAATTTGACTGTATGTAGACTGTGCCTTGCCACCAACTGCCGTTTGTTTACGATAGCAAATACTCCATTGCAGTATGTGTATGAGAAAATTACCAATATTGATTTAATCACACAAGACATGAGACCCACAACATCTTGTAACATATGCTATGCACTTCTGAAAAAATTCCACAAATTTATGCAAACTACTAGAAAAGCGGAAATATTACTTACAGAAATGTACAAGGAAAATGTTgaggtaatcaataaaatattatcagatATAGATGGGCAAGCCAATGGATTAAACGGATCATTGAGCATTTTCAGACTAGATTCTACTGACATCCCACCGCATGAAAGTGTAcagcacaaaattaaattagagCCTGTTTTGGAAGAGTTATCTCAAGACATGACTACTCCCTTTAACGATGATGGTTGTGATTACCAAGATGGTGCTGAGCAAGAAGAAGTGCAATATGATTTAGATACAATAGTCAAAATGGAGGAAGTGGTTTCTGAAGGTCCTGCCCCTGCAAACAACTTAAAACTCAAGATACAAGATTTAAAGAGAAAGACTAGGCAGAttccaataaaaagtaaatcaaatgaaaataaaaaaattagacctaaaaagaaaacttatgaGTGCGATGTCTGTAAAAAACAGTTTGTTAAAAACTCGCATTTGACCAGTCATTTGAAGACTCACACCGGTGACAAAGCACACCAATGCCATATATGTGAGCGCCAATTTTCTCAGAAACAAAACTTGAAAGTCCATTTAAGTACGCACTGCGTCGAGAAACCATACGAATGCAACTTCTGCCAACGACGGTTTAGAGCGAAACGTAATTTGCAAATTCATTTAGTCACACACGAAAGCGAGAAACCGTCGTTTATTTGCGATGTTTGTCAACGTGTTTTCCATCATAGATGCAGTTTGTATTATCACATAAAAACTCACTCTACAATGCGGCCATTTCAGTGTCATGTGTGTCATCAAGGCTTCCGAGAGAAAAATCATCTGTCGGTGCATTTAAGAATACATTCGGGCGAAACTCCATTCGTTTGTAAGTTCTGCCAGCGTAAATTTAACAGCTCCGGAAGTTTAGTTAAACATATTAGGATACATACCGGTGAGAAACCATACGAATGCAATGTTTGCCACCGACGGTTCACGCAAACATCACATTTGGCCGGCCATTTAAAGACTCATACTGGCGAGAAACCACACGAATGTATGGTTTGTCAGCGTCGGTTTTATACAAATGCTTTACTCAAAATTCATTTAAGGACACACACAGGTGAAAAACCTTACGAATGTAATATTTGCCAACGAAGATTCGCCAGAGGAACACATTTGACACGACATACAAGGACCCATACTGGAGAGAAACCTCATGAGTGTCATATTTGCCATCACAGATTTATTCAATCAACAGATTTGAAAACGCATTTAAGAACACACACAGGCGACAAACCATTTGAATGTAGTATATGTCAgagtaagtttaatttaaaaagcaagTTGAAGAAACATTTTGAGACACATTCGTCTGAAAAATCTGTTGATGGCAATAGTTGA
Protein Sequence: MESQINANLTVCRLCLATNCRLFTIANTPLQYVYEKITNIDLITQDMRPTTSCNICYALLKKFHKFMQTTRKAEILLTEMYKENVEVINKILSDIDGQANGLNGSLSIFRLDSTDIPPHESVQHKIKLEPVLEELSQDMTTPFNDDGCDYQDGAEQEEVQYDLDTIVKMEEVVSEGPAPANNLKLKIQDLKRKTRQIPIKSKSNENKKIRPKKKTYECDVCKKQFVKNSHLTSHLKTHTGDKAHQCHICERQFSQKQNLKVHLSTHCVEKPYECNFCQRRFRAKRNLQIHLVTHESEKPSFICDVCQRVFHHRCSLYYHIKTHSTMRPFQCHVCHQGFREKNHLSVHLRIHSGETPFVCKFCQRKFNSSGSLVKHIRIHTGEKPYECNVCHRRFTQTSHLAGHLKTHTGEKPHECMVCQRRFYTNALLKIHLRTHTGEKPYECNICQRRFARGTHLTRHTRTHTGEKPHECHICHHRFIQSTDLKTHLRTHTGDKPFECSICQSKFNLKSKLKKHFETHSSEKSVDGNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -