Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063562.1:389809-398366[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0013 0.084 14.0 0.5 1 21 143 163 143 164 0.95

2 12 2.4e-05 0.0016 19.4 2.9 1 23 171 193 171 193 0.98

3 12 0.0065 0.43 11.7 0.1 2 23 243 264 242 264 0.97

4 12 0.00027 0.018 16.1 4.1 2 20 272 290 271 293 0.93

5 12 0.00022 0.015 16.3 0.4 1 23 299 321 299 321 0.99

6 12 3.4e-05 0.0023 18.9 5.6 1 23 327 349 327 349 0.97

7 12 2.3e-06 0.00015 22.6 1.3 1 23 355 377 355 377 0.96

8 12 0.0002 0.013 16.5 0.1 1 23 383 405 383 405 0.95

9 12 9.1e-06 0.00061 20.7 1.7 1 23 411 433 411 433 0.98

10 12 9.6e-06 0.00064 20.6 5.9 1 23 439 461 439 461 0.99

11 12 4.2e-06 0.00028 21.8 0.6 1 23 467 489 467 489 0.98

12 12 0.00021 0.014 16.4 0.5 1 23 495 517 495 517 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0013	0.084	14.0	0.5	1	21	143	163	143	164	0.95
2	12	2.4e-05	0.0016	19.4	2.9	1	23	171	193	171	193	0.98
3	12	0.0065	0.43	11.7	0.1	2	23	243	264	242	264	0.97
4	12	0.00027	0.018	16.1	4.1	2	20	272	290	271	293	0.93
5	12	0.00022	0.015	16.3	0.4	1	23	299	321	299	321	0.99
6	12	3.4e-05	0.0023	18.9	5.6	1	23	327	349	327	349	0.97
7	12	2.3e-06	0.00015	22.6	1.3	1	23	355	377	355	377	0.96
8	12	0.0002	0.013	16.5	0.1	1	23	383	405	383	405	0.95
9	12	9.1e-06	0.00061	20.7	1.7	1	23	411	433	411	433	0.98
10	12	9.6e-06	0.00064	20.6	5.9	1	23	439	461	439	461	0.99
11	12	4.2e-06	0.00028	21.8	0.6	1	23	467	489	467	489	0.98
12	12	0.00021	0.014	16.4	0.5	1	23	495	517	495	517	0.97

Sequence Information

Coding Sequence: ATGACAAACATGTTGCATCGGAACAAAATAGATGGAAGATGCCGTACATGTCTTGAAGAGGTTTCAGAGAAAATGCATGATATTTTCACCGAATTCGTAAATTCTACCAGTCTGTTCGGTATGCTGACGTCATGCACATCTCTTTCGATTGATGTTGGAGATGACTACCCGAAGCAAATATGCAAGAATTGTTATGACTGTCTCGTCAACTTTTGGCAATTCAAGATGTTGGCCGAAAAGATAAACAGCCAGTTAACAACACAAACACAAACAAGTTCAGACATAAAAGTTGAAAATGAAGAAGTCAGCCTTGATCAACAGATGTCAGACGCACATATTGCGGACACTGAAACCAATGAATTTAATAACCAGAATGAAACTATACCAAAAGTAGAATCGTCATTAGAAATACCAACCAATAAAACTTACAAATGCAAAGACTGCTCTAGagaatttgaaaatgtttacaaattggAAGAACATTACAATTTGCTATGCCAAACTTCTGTATATCAATGTGAATATTGCAGTAAAACCTTTAAAAAGGAATCCAAACTGGCCAGTCATAAATTacggcacaaaaataaaaaactttacaCATGTATTTTATGCTCAGACACATTCAGACATCATTTCAAATATGTAAAGCATTTAGTAACACATAACAAAGACGCGAAAAACAGGCAATGCATGTCTGAAATAAACCAAAACAATAACCAAAGTGTCAAATGTGATGTTTGTTCATCCGAATTTAAGTCTATGAATGCGCTAGCTGCTCACACCAGAATACATACGGACAAAGACAGGATATTGTCATGTCCCATTTGCAATAAAATCTTTAAGAAAACAAGCCACTTGAAAAGGCACGAATTGTGTCACGAAGTTAACAAGCCGTTTAAATGTGGTTTGTGTAAAAAGGCTTTCATCACGGAGAGCATCCTCATGGAACATATGAATAAGCACAATGGTCTTAAGCCACATGTGTGTCCGATTTGTTCAAAGTGTTTCTCTCACATGTCCACGTTGACCACTCATGTGAAGATCCATACGAGAGAGAAGCCGTTCCTGTGCCCGACTTGCGGGAAAAGATTCGATTTGAGCACTAATCTAAATCAGCACATGAAGAGGCATCTCGGGTTGAAATGTTTCGCTTGCGGCGCTTGCCCAAAAACTTTTGTCAGTAAAGGGGAACTGAAGTCCCACAGCATAACCCACACTGGGGAGCGGTCTTTCTCGTGTGATGTTTGTGATGCAAAGTTCACCAAGAAGAGTTCCCTGAGGAAGCACACCTTGAGCCATCTGGGAATCAAGCCGTACCGTTGTGATAACTGCACTATGAAGTTCTCTAGCAAGTACCACCTCAAGCGGCACACTAGAATCCACACCGGTGAGAAGCCTTACAAATGTGAGATGTGTGAACGCGGCTTTACGCAGAGCAATGACCTCGCCAAGCATCGGCGAGCGCATCTCGGCGACAAGTTGTATAGATGTACCCAATGCTCCGAAGGTTTCCGTCTGAAAGCCGAACTGCGCCAGCACATCTCCGAACATTTCATATCGGCCCGCTTCGAAGCTATGACCGTGAAGAATGACGCGGCAGCGGCGGACAGAACACCTGATGAGCATGCTCGCATTGATGAAATAGTGGAGGAGGTGGTTGAGGGCATGTTTAGTGAGGAACCTGGTGAGGAAGTTAATGAGATATAG
Protein Sequence: MTNMLHRNKIDGRCRTCLEEVSEKMHDIFTEFVNSTSLFGMLTSCTSLSIDVGDDYPKQICKNCYDCLVNFWQFKMLAEKINSQLTTQTQTSSDIKVENEEVSLDQQMSDAHIADTETNEFNNQNETIPKVESSLEIPTNKTYKCKDCSREFENVYKLEEHYNLLCQTSVYQCEYCSKTFKKESKLASHKLRHKNKKLYTCILCSDTFRHHFKYVKHLVTHNKDAKNRQCMSEINQNNNQSVKCDVCSSEFKSMNALAAHTRIHTDKDRILSCPICNKIFKKTSHLKRHELCHEVNKPFKCGLCKKAFITESILMEHMNKHNGLKPHVCPICSKCFSHMSTLTTHVKIHTREKPFLCPTCGKRFDLSTNLNQHMKRHLGLKCFACGACPKTFVSKGELKSHSITHTGERSFSCDVCDAKFTKKSSLRKHTLSHLGIKPYRCDNCTMKFSSKYHLKRHTRIHTGEKPYKCEMCERGFTQSNDLAKHRRAHLGDKLYRCTQCSEGFRLKAELRQHISEHFISARFEAMTVKNDAAAADRTPDEHARIDEIVEEVVEGMFSEEPGEEVNEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -