Basic Information

Insect: Amyelois transitella
Gene Symbol: ham
Assembly: GCA_032362555.1
Location: CM063564.1:6398607-6440868[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.049 3.2 9.0 0.0 2 23 257 279 257 279 0.94

2 9 0.00095 0.064 14.4 0.6 1 23 286 309 286 309 0.93

3 9 2.5e-08 1.6e-06 28.8 0.1 1 23 315 338 315 338 0.96

4 9 2.1e-06 0.00014 22.7 1.7 1 23 344 366 344 366 0.95

5 9 7.5e-05 0.005 17.8 6.1 1 23 372 394 372 394 0.99

6 9 0.00015 0.01 16.9 0.4 2 21 402 421 401 422 0.94

7 9 1.8e-08 1.2e-06 29.2 0.7 1 23 811 833 811 833 0.98

8 9 6.5e-07 4.3e-05 24.3 1.7 1 23 839 862 839 862 0.97

9 9 7.1e-06 0.00047 21.1 3.3 1 23 868 890 868 890 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.049	3.2	9.0	0.0	2	23	257	279	257	279	0.94
2	9	0.00095	0.064	14.4	0.6	1	23	286	309	286	309	0.93
3	9	2.5e-08	1.6e-06	28.8	0.1	1	23	315	338	315	338	0.96
4	9	2.1e-06	0.00014	22.7	1.7	1	23	344	366	344	366	0.95
5	9	7.5e-05	0.005	17.8	6.1	1	23	372	394	372	394	0.99
6	9	0.00015	0.01	16.9	0.4	2	21	402	421	401	422	0.94
7	9	1.8e-08	1.2e-06	29.2	0.7	1	23	811	833	811	833	0.98
8	9	6.5e-07	4.3e-05	24.3	1.7	1	23	839	862	839	862	0.97
9	9	7.1e-06	0.00047	21.1	3.3	1	23	868	890	868	890	0.98

Sequence Information

Coding Sequence: ATGCTACAATTTCGTCAAATGTTGAATTTTGATACTAATCCAAAAATGAAGATATCTGCAGCAGACAGCCAGGAATCCGGTAGCCCCCCGCCCAGCCCGACAGATTCGGCTGCATCAGAATCAGCCCCTACCTTAGTCCACATAAAGCAGGAGAATATGCCACCTGGAGCCGACATCAAAGAGTACTACGGGTCTTTAGATTTCAGTCTCTCAGACACATACCTCCCCTCTAACTACCCCGACTACGGCCCTGGCTTCCTACAAAGACCACTAGATCTACAAAGCCAAAGATATCTAGACCCCGATAAAGATATCAAAGAACCACCGGAAGATGACAAAGAAACTTTAAATATACCAGAAGAATTGATAATGAAAAGTGGCGGAGTATTTGCTAGATCCAATATTTTAGTTGGTACAAAGTATGGCCCTTTTATCGGCAAATGGGGGACGCAGCCGCTGGATGCCAAATACGCTTGGGAGGTGGTGGGAAAGAATGGCATTCGGGGCTGGCTGGACGGTACAACTGAGAAGGCCAACTGGTTGAAATTCATCCGCTCCACAAACTACACCCAGGACGTTAATTTGCAACACCTATTGCATGCTGGAGAGGTTTGGTACAAGGTAATCCGGGAGATCCCGTCTGGTCAGGAGCTGCTACTTGGACCTAGGACTCCTCTGCCACTGCAAGATGTACTGCCAAATGAACACCAAAGTTCGAGTAACAAATTCTCGCAAGCTGAAGAGGAGGATCGTGAAGATAGCGAGCCAAGGTGTTCCTTTTGTGACGCGCCCTTTCCAAACATTGACGCGCTTGACCGTCACCTGATACAAGCTCACGGCCAGACCCCAGGCGCTTTTCACTGCGAACTCTGCAACCGAGCGTACAGTTCCCGGGCATTGCTGCTGCGACACCGAGCTTTAGCCCACACTGACATCAGGAAATATCCCTGCGAGAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCCCAGCACGTGGGTGCTCGCAGCCACGCGTGCCCGGAGTGCGGGAAGACCTTCGCCACTTCATCAGGGCTGAAGCAGCACACTCACATCCACTCCAGCGTCAAGCCGTTTCAGTGCAAGGTGTGCTTTAAGGCATATACCCAATTTTCCAACTTGTGTCGTCACAAGCGAATGCACGTTGCGTGCAGAGCTCTCGTCGAGTGTGGCAAATGTGGCCAGTCCTTCACTTCCTACGCCTCACTCACTAAACACAAGCGGTTCTGTGACACCGCATCTGCCGGCGTCAACCTCCGCGGTCAGATGTCACAGGGACTACCCCAGATACCTCCTCTACCAAACGTCGGAATGAATAACCCAAATAATCCAAACCCTTTTCCCTTATACAGGGGACCTGCATTACCTTTACCATACAATACTTACTACCCAGCACTGTTCTCGGCTGCGGCAGCTGCTTGCCAGCCAGATTTTTTGAACCCATTATTGTTCAATGTTCAAGGAAGACTGGCAATGGAACACGACATTGCTTTATCAAATGCAAATTTGGTATCAAAACAACAAGATGGTCGGGTATCTGTTAAAAGTATTGATAGCTCCACCTCCATAGATGATAAGAAGAACAAAGAAATGGAATTTGAAAACAGGCGAAATAACGACATTTCAGACAGGGCTACACCTACTAAAGTACAAAGTTTTTACAAACAATCTCCACCTTCATCTGAAGATATTTCTCAGCCTCGCCCATCTCCAATTATGACAATGCCATCTCCCATTGTACCATTCAACTTTCAAAGAGAAGATTTAAAACGCAAGTCACCCTTTAATTTTTCACTGAAACTTAACAATAATGATATGAAAAGACATAAATCTGTTTCACCTTCTCCTAAAGATTTATCCAAAAGTATCACGAGTGAAGATAAAAATTCTGAATATTCTGATGTAGAAGAAGACCATAAGAAAGACCAAAGTGATCAACCCTTAGATTTATCTGTATCAAGAAAACAAAGTGATAAAGATTCAGAAGCTGAAAATGATGATCGTTCCTTTCGCAACTCATCCGTGAAGTCTTATTCTCCACCAGAAAGTCCCACAGAAAGAAGCAAAACTCCTGAAAACGACACGACGGATGTAGATGTAGAGGGAGTGGAGACAAAACGTGAGGATTCGCCGGCCATGGTTTCACAACCATTAGCATTTCCGATGCCCGTCCATCCACAGCATAATAACATTATTGATGCTATGTATCGACCTAGGTTTCCTCCTTTTCACTCTGCTGATTCGCTTTTGAGCTCCACACATTCACCCTACGTTCCGAGcccgtttaattttttatcccCACTTCTCGGTACTGATGGCCCAGAACGGCAACCTAGTGCATATGCTAAATTTCGAGAACTGAGCGCCGGTTCTGGCAAACTTCGAGACCGGTACGCCTGCAAATTTTGTGGAAAAGTATTTCCTCGCAGCGCCAACCTAACTCGTCACCTTAGAACACATACTGGAGAACAGCCGTACAAATGTAAGTACTGCGAGCGTTCGTTCTCAATTTCATCTAATTTGCAACGTCACGTCAGAAATATTCATAACAAAGAGAGACCGTTTAGATGTCCTTTATGTGATAGGTGTTTCGGTCAGCAAACTAATTTGGACCGGCACTTGAAGAAGCATGAAGCGGAAGGCGGTGATTCACCCAGCTCGGCCGATACTGAGCGTGAAGACGCGTACTTTGATGATATAAGATCTTTCATGGGAAAAGTGACATGTTCTCCGAGCGCGGGCACCCCGCCCCCGTCGTCCCCGCACAGCGGCGCGCACGCCGGCGCGCTGCCGCCGCTCCCCGCGCACCCGCCGCACGCGCCGCCGCGGCCCTCGCTCGCGATCTCCACATAG
Protein Sequence: MLQFRQMLNFDTNPKMKISAADSQESGSPPPSPTDSAASESAPTLVHIKQENMPPGADIKEYYGSLDFSLSDTYLPSNYPDYGPGFLQRPLDLQSQRYLDPDKDIKEPPEDDKETLNIPEELIMKSGGVFARSNILVGTKYGPFIGKWGTQPLDAKYAWEVVGKNGIRGWLDGTTEKANWLKFIRSTNYTQDVNLQHLLHAGEVWYKVIREIPSGQELLLGPRTPLPLQDVLPNEHQSSSNKFSQAEEEDREDSEPRCSFCDAPFPNIDALDRHLIQAHGQTPGAFHCELCNRAYSSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTASAGVNLRGQMSQGLPQIPPLPNVGMNNPNNPNPFPLYRGPALPLPYNTYYPALFSAAAAACQPDFLNPLLFNVQGRLAMEHDIALSNANLVSKQQDGRVSVKSIDSSTSIDDKKNKEMEFENRRNNDISDRATPTKVQSFYKQSPPSSEDISQPRPSPIMTMPSPIVPFNFQREDLKRKSPFNFSLKLNNNDMKRHKSVSPSPKDLSKSITSEDKNSEYSDVEEDHKKDQSDQPLDLSVSRKQSDKDSEAENDDRSFRNSSVKSYSPPESPTERSKTPENDTTDVDVEGVETKREDSPAMVSQPLAFPMPVHPQHNNIIDAMYRPRFPPFHSADSLLSSTHSPYVPSPFNFLSPLLGTDGPERQPSAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPSAGTPPPSSPHSGAHAGALPPLPAHPPHAPPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00013328;
90% Identity: iTF_00640691;
80% Identity: -