Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063559.1:9633085-9635955[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.012 0.81 10.9 4.2 1 23 64 86 64 86 0.98

2 12 0.00015 0.0098 16.9 0.0 1 23 107 129 107 129 0.96

3 12 0.21 14 7.0 3.0 5 23 137 156 134 157 0.93

4 12 0.039 2.6 9.3 3.0 1 22 246 266 246 267 0.77

5 12 3.2e-06 0.00022 22.1 2.2 1 23 273 295 273 295 0.97

6 12 0.00089 0.059 14.5 1.4 1 23 300 322 300 322 0.98

7 12 4.2e-08 2.8e-06 28.1 0.2 1 23 328 350 328 350 0.99

8 12 4.5e-07 3e-05 24.8 0.3 1 23 356 378 356 378 0.99

9 12 5.4e-06 0.00036 21.4 0.8 2 23 385 407 384 407 0.97

10 12 1.4e-05 0.00091 20.2 0.4 1 20 413 432 413 434 0.96

11 12 0.0032 0.22 12.7 1.6 3 23 443 463 441 463 0.96

12 12 0.00094 0.063 14.4 0.6 1 23 471 494 471 494 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.012	0.81	10.9	4.2	1	23	64	86	64	86	0.98
2	12	0.00015	0.0098	16.9	0.0	1	23	107	129	107	129	0.96
3	12	0.21	14	7.0	3.0	5	23	137	156	134	157	0.93
4	12	0.039	2.6	9.3	3.0	1	22	246	266	246	267	0.77
5	12	3.2e-06	0.00022	22.1	2.2	1	23	273	295	273	295	0.97
6	12	0.00089	0.059	14.5	1.4	1	23	300	322	300	322	0.98
7	12	4.2e-08	2.8e-06	28.1	0.2	1	23	328	350	328	350	0.99
8	12	4.5e-07	3e-05	24.8	0.3	1	23	356	378	356	378	0.99
9	12	5.4e-06	0.00036	21.4	0.8	2	23	385	407	384	407	0.97
10	12	1.4e-05	0.00091	20.2	0.4	1	20	413	432	413	434	0.96
11	12	0.0032	0.22	12.7	1.6	3	23	443	463	441	463	0.96
12	12	0.00094	0.063	14.4	0.6	1	23	471	494	471	494	0.98

Sequence Information

Coding Sequence: ATGGAGGTAGATTCAGTTCCTAAGtCATTGAATCCTTACATCAAATTGTTCAAGTTGGATGTGGAGgcctataaaaaattaaataatcatttaCAAGAGGCTGACCGTTTTGTGGAACTGGAAAACCAGTCTAATCAGCTAATAGAAAATACTCAGACGCTGCAAGTTGTATTGAAGAGGATTAAGATATTCGAATGCAAAGAATGTTTATTTTGCTATACTACACAAAGGGACTACAGACTACACGTGCTTAAACACGCGAAGCCTATTGTgAACACAGAATTCTCCTACGAGAAGTATGGTAACTACATCAAAAGATTTGAATGTGATGAGTGTGATATGAAATTTGTTGCCCAGAGCACTTTGAGAGCCCACGCTGCAGTTCATGTCCCTTACCCTCATGTCTGCCATTGTGGTATCGGTTACCGCCAGAAAACTGATCTTGTAGCCCATAAAAAACTTGTACACCACGAAGATGAAGAAAGAAATGTCTGGAAACCAAAAACGAAATATGCAGGGAAAAAAGAGAAATCAGAATTCTGCATCAAGTCTGAATATGTTACACAAGAGAGTGATGCAATCAAAACAAAGTTAGGAGTATACATACCAAAGACAGTTAAATTagataaaagtaaaactaaaagaaaaaagattcgtCGCGACAGTACATGCAGCAATAGCGACGTATTGACTAGAGTGAAGTATGAAAAGATAGTAGTGGACGGTAATACGAGGTATCAATGTCCGATATGCCACAAAGCGTATTCATACCATTCCATAAAACAACATAATACTGTTCATTCAGGGGAGAGACCATACAAATGTGATATATGTGGAAAATGTTTCACACAAACCGGTGCTCTTAATACACATAAAGTGAGACACGAGGGCGCCACTTTTGAATGTCCTGTATGTAAGAAACTGTTATCTTCAAAATGTAGTGTGAATCTTCATATGCGTGTTCATACCAAAGAGAAGCCATACAAATGTGACTATTGTGAAAAGGCGTTTGCAGATCCTAGTGCATTTGCTAGACATATTAGGACCCACACTGGGGATAAGAGGTATAAATGTAAAGAATGTCCCATGAGCTTCACGGACGCTAGTGGATTGATAGCGCACAGAAAAAGGCACATTGGTATAAAAACAGTGCAATGTGAAATCTGTGATAAGAAATTCTACTCTAAGTCTGAACAAAAGAAACATATTCTTACCGTGCACGCCCATCAATACCTTTACGAATGCGACTATTGTACCAAACGTTTTGCAACGAAAAAATCGTTGCAAGATCACATAGGGAGAAACGGGGTACATTCTGCATGGGCTTGCAAATATTGTCCGAGgaaattttattctaaacaaTTGAGACAAAAGCATTTCAACATTCATAAAAAACTTGAATTTGATGATTATGAATGTGATTTATGTGCGGCAACATTTTGTACTAAGGCGTCGGTTGCTAaacatttgaaaatggaacataattag
Protein Sequence: MEVDSVPKSLNPYIKLFKLDVEAYKKLNNHLQEADRFVELENQSNQLIENTQTLQVVLKRIKIFECKECLFCYTTQRDYRLHVLKHAKPIVNTEFSYEKYGNYIKRFECDECDMKFVAQSTLRAHAAVHVPYPHVCHCGIGYRQKTDLVAHKKLVHHEDEERNVWKPKTKYAGKKEKSEFCIKSEYVTQESDAIKTKLGVYIPKTVKLDKSKTKRKKIRRDSTCSNSDVLTRVKYEKIVVDGNTRYQCPICHKAYSYHSIKQHNTVHSGERPYKCDICGKCFTQTGALNTHKVRHEGATFECPVCKKLLSSKCSVNLHMRVHTKEKPYKCDYCEKAFADPSAFARHIRTHTGDKRYKCKECPMSFTDASGLIAHRKRHIGIKTVQCEICDKKFYSKSEQKKHILTVHAHQYLYECDYCTKRFATKKSLQDHIGRNGVHSAWACKYCPRKFYSKQLRQKHFNIHKKLEFDDYECDLCAATFCTKASVAKHLKMEHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -