Atra019244.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063575.1:4166635-4167726[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00088 0.059 14.5 0.2 1 23 36 58 36 58 0.98 2 11 4e-06 0.00027 21.8 0.5 3 23 63 83 61 83 0.98 3 11 0.00012 0.0081 17.2 0.8 1 23 89 111 89 111 0.97 4 11 0.00034 0.022 15.8 9.1 1 23 117 139 117 139 0.98 5 11 0.00017 0.011 16.7 2.8 1 23 145 167 145 167 0.99 6 11 1.1e-08 7.7e-07 29.8 1.5 1 23 173 195 173 195 0.99 7 11 1.7e-05 0.0011 19.9 1.7 1 23 222 244 222 244 0.99 8 11 0.00016 0.011 16.8 1.0 1 23 250 272 250 272 0.99 9 11 3e-05 0.002 19.1 7.1 1 23 278 300 278 300 0.98 10 11 0.00028 0.019 16.0 0.6 1 23 306 328 306 328 0.99 11 11 0.00014 0.0095 17.0 1.4 1 23 334 356 334 356 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCCACATCGGTTAAGATCATCCAACAATTCGAAGAAAAAATAACAGCAAACAAGCGCGTTCAATCTTTAGAGCGTGTCATAGTAGATTCTAATTCCCTATACATTTGTCAGTTTTGCGAAAAAGTTTTCGCGGAAGAAAAACAGATACGAGTACACTTAAGAGAGCATAAGCCATTTGGTTGCGCGGTTTGCCAGAAACAATTCGACAGGCCGTATTACTTACAGAGACATATAAAAACTCATTCCGGTATAAAACCTTACGCGTGTCACATTTGTGAGAAAAAATTCGGTGAGGCGCGACTTCTGAAGCAACATTTGGTGACGCACACGGACGAAAAACCGTACGAATGTGACGTGTGCCATCATAGATTTCATAAAAAGTCTAACTTGAAAAAGCATATAACGAAACATACCGGCGAGAAACCTTACGAATGTGACGTTTGTCATCGCAGATTCCGAGAAAAATTCCCGTTTCAGATACATTTAAGAATGCATACGGGCGAGAAACCTTTTCAATGTGATTATTGCGGTAAAAGGTTTCGTTCGAATAACGAATTGCAAGTGCATTTACGGACGCACACGGGGAGCGGTGGGGCGAAGTCTAGCGAGGGGAAAAAGGTAGTGAAAAGAGAAAGAAGCGACCAACCCGGGAGATTATATGAATGTGACGTTTGCTATCGTACGTTCAGTATAAAAGCTAATATGAAAACGCATCGCAGAACTCATACGGGTGAGAAACCTTATCAGTGTGCTGTTTGTCAACGTACATTTGCCGCGAGTTACACATTAGATAGGCATTTTAAAACGCACACGGGCGAGAAATCGCATGAGTGTGACATTTGTCATCGTAAGTTTACTATGAAACAACATCTCAAGGCGCATTTAAGAATGCACACTGGCGAAAAGCCGTATGAATGTAGTATATGCCAACGTCGTATTAGAGCGAGGTATACGCTAGATGTTCACATGAGAACGCACACAGGTGAGAAACCATTCGAATGTACAATTTGTCAACGTAAATTTGCGTTAAAACAAACGTTGGACAGTCATTTGAAAACGCACAATAATGAGAAACGTGCTCATTGA
- Protein Sequence
- MSSTSVKIIQQFEEKITANKRVQSLERVIVDSNSLYICQFCEKVFAEEKQIRVHLREHKPFGCAVCQKQFDRPYYLQRHIKTHSGIKPYACHICEKKFGEARLLKQHLVTHTDEKPYECDVCHHRFHKKSNLKKHITKHTGEKPYECDVCHRRFREKFPFQIHLRMHTGEKPFQCDYCGKRFRSNNELQVHLRTHTGSGGAKSSEGKKVVKRERSDQPGRLYECDVCYRTFSIKANMKTHRRTHTGEKPYQCAVCQRTFAASYTLDRHFKTHTGEKSHECDICHRKFTMKQHLKAHLRMHTGEKPYECSICQRRIRARYTLDVHMRTHTGEKPFECTICQRKFALKQTLDSHLKTHNNEKRAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -