Basic Information

Insect: Amyelois transitella
Gene Symbol: -
Assembly: GCA_032362555.1
Location: CM063576.1:1242302-1245632[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00025 0.017 16.2 2.8 1 23 194 216 194 216 0.98

2 11 0.00015 0.01 16.9 2.9 1 23 226 248 226 248 0.98

3 11 0.00047 0.032 15.3 2.5 1 23 256 279 256 279 0.98

4 11 7.3e-06 0.00049 21.0 1.8 1 23 285 307 285 307 0.98

5 11 3.6e-06 0.00024 22.0 2.1 1 23 313 335 313 335 0.98

6 11 1.1e-06 7.6e-05 23.6 0.4 1 23 341 363 341 363 0.96

7 11 4.1e-06 0.00027 21.8 1.1 1 23 369 391 369 391 0.99

8 11 1e-06 6.8e-05 23.7 0.3 1 23 397 419 397 419 0.98

9 11 0.00016 0.01 16.8 0.7 1 23 425 447 425 447 0.98

10 11 6.1e-05 0.0041 18.1 3.3 1 21 453 473 453 475 0.96

11 11 3.9e-06 0.00026 21.9 0.3 1 23 481 503 481 503 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00025	0.017	16.2	2.8	1	23	194	216	194	216	0.98
2	11	0.00015	0.01	16.9	2.9	1	23	226	248	226	248	0.98
3	11	0.00047	0.032	15.3	2.5	1	23	256	279	256	279	0.98
4	11	7.3e-06	0.00049	21.0	1.8	1	23	285	307	285	307	0.98
5	11	3.6e-06	0.00024	22.0	2.1	1	23	313	335	313	335	0.98
6	11	1.1e-06	7.6e-05	23.6	0.4	1	23	341	363	341	363	0.96
7	11	4.1e-06	0.00027	21.8	1.1	1	23	369	391	369	391	0.99
8	11	1e-06	6.8e-05	23.7	0.3	1	23	397	419	397	419	0.98
9	11	0.00016	0.01	16.8	0.7	1	23	425	447	425	447	0.98
10	11	6.1e-05	0.0041	18.1	3.3	1	21	453	473	453	475	0.96
11	11	3.9e-06	0.00026	21.9	0.3	1	23	481	503	481	503	0.98

Sequence Information

Coding Sequence: ATGgaggacaaaataaaaataagtgccATGAAAGTGTGTAGAGTGTGCCTAAATGAATCTAGTAACATGATATCACTGTTTGACAAAATCAGTGGAGAGACGACTATATTAGAAATGATGAATTTTGTCACAAATATCGACGTAAAAATGGGTATCCGCTGGCCAAGGCAGGTATGTGGTGATTGCAAAACTAAAATACTCACAGCTAACGATATAAAAAAGCGGTGTATTGAATCTGAAACAATATTGGACCAATTCTTAGAAGTCTGTGACCAAGTAATGGGCGAAATACAAGAAACTCAAGAAAGTCCGGTTAAAGTTGAGCTTTTCGGCCCTACAGAGCCTTTTAAGAAAGACCCTACATATTCTGACCTCCCAATGTTAATAGAACCAGTTTTCACTGCCAGCGATGTAAAAAATGACAATATAAAAGTTGaattaactgattttaatatGTCCAATGATAGCTATGATGATCATTTTGACTCAGAAGAGAAACATGAATTTATCTCAGACTCCAATCATGAACCTCAATCAATGACAAACCAATTAGATAGTACAgaagataaaacaaataaatataactgttCAAAATGCGACATGAGTTTTCCCACATTAAAACAACGTAGAAGTCACCAGAAAACGCATAAAAAAGATGGAGAAAAGCTTGGCAATTACGAATGCACATACTGTTTCCGTAAGTTTTTGAGAAAGTCTTCGTTATCAACACATATGAATGTACACGATGCGAAAGACAAGATTAAATTCACTTGTGTTACTTGCAAACGAGAGTTTAAACATCAAGCATTTTTAGACAACCACATACGGTCCGTACATCCAAAAAAAGGAGGATTTACATGTCAACACTGCGGAATTAGTTTCGAAACACAAGAGCTGTTAAGCAACCAtgaaaaaacacataaaattactaaaaagcACGAGTGCAAGTTGTGTAATAAGTCTTTCGTAATGTTGTCAACTTTAAATGATCATATAAGGACGCATACTGGTGAGAAACCATTTTTGTGTTCGATATGCGGAAGGGGTTTCAGTCAGAATACGAATTTGGCTCAGCATGTACGTAGACACCAAGGGCTGAAGCCGTTCAAATGTGATGAATGTAAACGCAGCTTCGTGTCGAAAGGCGAATTGGACGCTCACAAGCGAAAACACACAGGCGCCCATCCCTTCGTTTGCGACGAATGCGGCAACGGTTTCACCACGTCCAGCTCCCTAGTCAAACACCGTCGTATACACACGGGTGAGAAACCCTACGCCTGTGACTTGTGCCCGAACAAATTCACCGCTCTGAGCACACTGAAGAACCATAGAAGGACGCATACGGGTGAGAAACCTTACCAATGTTCGCATTGTGAGAAAGCTTTCGTGCAACGGAACGATTTGATTTCTCATATAAGATGCCACACTGGAGAGAGGCCTTATGTGTGCTCGCAGTGTGGACAGTCCTTTAGGAAGGCGGCCGGTTTGAAGACTCACGTTAAAATGCATAGTAAGGATACGGTGCAAAGGGAGTTGTTGGTACAGGgtgttaatattttgttgatGCCTGAGAATAGCTAG
Protein Sequence: MEDKIKISAMKVCRVCLNESSNMISLFDKISGETTILEMMNFVTNIDVKMGIRWPRQVCGDCKTKILTANDIKKRCIESETILDQFLEVCDQVMGEIQETQESPVKVELFGPTEPFKKDPTYSDLPMLIEPVFTASDVKNDNIKVELTDFNMSNDSYDDHFDSEEKHEFISDSNHEPQSMTNQLDSTEDKTNKYNCSKCDMSFPTLKQRRSHQKTHKKDGEKLGNYECTYCFRKFLRKSSLSTHMNVHDAKDKIKFTCVTCKREFKHQAFLDNHIRSVHPKKGGFTCQHCGISFETQELLSNHEKTHKITKKHECKLCNKSFVMLSTLNDHIRTHTGEKPFLCSICGRGFSQNTNLAQHVRRHQGLKPFKCDECKRSFVSKGELDAHKRKHTGAHPFVCDECGNGFTTSSSLVKHRRIHTGEKPYACDLCPNKFTALSTLKNHRRTHTGEKPYQCSHCEKAFVQRNDLISHIRCHTGERPYVCSQCGQSFRKAAGLKTHVKMHSKDTVQRELLVQGVNILLMPENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -